Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01445 ATGACTAACGCACAAGGCGGCTCCATGTTGGTGGAGCCAAACACACACAAGGCCTTACACAGACCCAAATTTGGAGCCTTGTTGCACTCCGAACCCAACAACATCGATGCCGATAACTTCCAATATAACCACCGCAACAACGTCAGCCACATGAACTACACCGATAGCAGCAATGATGTCTCTCCCTACTCCATGTCCCCATTGAACTACCCAAACCATTCTTCATCTCCTCTCAACAAGTCTCCATGGGTTTTACCCGCCTCACCCGCGATAAACCCCTTCCACCACCACCAAGACCACCTCCCCGGCAACAGCCTCATCGGATCCCTCGTTCGCGAAGAGGGTCACATATATTCCTTGGCCGTTTCCGGAGACTTGTTATACACCGGCTCCGACAGCAAGAATATAAGAGTTTGGAAGCATCTCAAGGACTACACCGGCTTCAAATCAAGCAGTGGATTGGTTAAAACCATAATAATCGCCGCCGGAAAAATCTTCACCGGCCACCAAGACGGTAAGATCAGAGTGTGGAAGGTTTCCTCCAAGAATCCAAGCAAGCATAAACGCATCGGGAGCTTGCCAACGTTCAAAGATTACATGAAGTGTTCCATGAACCCCAAGAATTACGTGGAGGTTCGCCGGAACCGGAACGCGGTGAAGGTGAAGCACTTCGACGCCGTTTCGAGTCTCAGTCTGGACAAGGACGAAGGGTTGCTGTACTCCGGGTCGTGGGACAAGACGGTCAAGGTGTGGCGCGTGGCGGATTTCAAGTGCCTGGAGTCGATCAACGCGCACGACGATGCGGTGAACGCGGTGGTGGCGATGCCCGGAGGGTGCGTGTTGACGGGGTCCGCGGATGGGACGGTGAAGATGTGGAGGAGGGTGAGCGACGAGAAGGGGAAGAAGCCGAAGCATCTGTTGAGCAGGGTTTTGCTGAAGCAGGAGAACGCGGTTACGGCGCTGGCGGTGAACCGCGAGGGCACGGTGCTTTATTGCGGTTCCTCCGATGGTATGGTGAACTTCTGGGAGAATGAGGAGAAGTGTGGGTTCACGCACGGCGGCGTTTTGAGGGGTCACAAGCTAGCCGTGCTCTGCCTGGCCGTGGCGGGGAACCTTCTCTTTAGTGGGTCTGCGGATAAGAAAGTGTGCGTGTGGAAGCGCGACGAGAGTGGGTTCCACACTTGCCATTCGGTTCTGACGGGTCACGTGGGTCCTGTTAAATGTATCGCCGTGGAGGAGGATCAGGCGCAACCGGAGAAGCCTCGCAACAGGAAAGATGATCAGCGGTGGATTGTGTACACGGGTAGCTTGGACAAGTCGGTGAAGGTGTGGCGCGTGTCCGAACAGGCGCCGGAGTTGAGCTCGTTTCAAACCTGGGCCACTCCTGGTCCCTTTACCACATAA 1404 0.5506 MTNAQGGSMLVEPNTHKALHRPKFGALLHSEPNNIDADNFQYNHRNNVSHMNYTDSSNDVSPYSMSPLNYPNHSSSPLNKSPWVLPASPAINPFHHHQDHLPGNSLIGSLVREEGHIYSLAVSGDLLYTGSDSKNIRVWKHLKDYTGFKSSSGLVKTIIIAAGKIFTGHQDGKIRVWKVSSKNPSKHKRIGSLPTFKDYMKCSMNPKNYVEVRRNRNAVKVKHFDAVSSLSLDKDEGLLYSGSWDKTVKVWRVADFKCLESINAHDDAVNAVVAMPGGCVLTGSADGTVKMWRRVSDEKGKKPKHLLSRVLLKQENAVTALAVNREGTVLYCGSSDGMVNFWENEEKCGFTHGGVLRGHKLAVLCLAVAGNLLFSGSADKKVCVWKRDESGFHTCHSVLTGHVGPVKCIAVEEDQAQPEKPRNRKDDQRWIVYTGSLDKSVKVWRVSEQAPELSSFQTWATPGPFTT 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01445 467 CDD WD40 114 445 - -
Vian5g01445 467 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 292 - -
Vian5g01445 467 Gene3D - 350 466 IPR015943 GO:0005515
Vian5g01445 467 Gene3D - 100 215 IPR015943 GO:0005515
Vian5g01445 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 343 IPR001680 GO:0005515
Vian5g01445 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 386 IPR001680 GO:0005515
Vian5g01445 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 292 IPR001680 GO:0005515
Vian5g01445 467 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 253 - -
Vian5g01445 467 PRINTS G protein beta WD-40 repeat signature 280 294 IPR020472 -
Vian5g01445 467 PRINTS G protein beta WD-40 repeat signature 239 253 IPR020472 -
Vian5g01445 467 PRINTS G protein beta WD-40 repeat signature 165 179 IPR020472 -
Vian5g01445 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 261 IPR001680 GO:0005515
Vian5g01445 467 FunFam BnaA09g28200D protein 210 297 - -
Vian5g01445 467 SUPERFAMILY WD40 repeat-like 105 446 IPR036322 GO:0005515
Vian5g01445 467 Gene3D - 216 348 IPR015943 GO:0005515
Vian5g01445 467 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 55 450 IPR045182 -
Vian5g01445 467 Pfam WD domain, G-beta repeat 257 292 IPR001680 GO:0005515
Vian5g01445 467 Pfam WD domain, G-beta repeat 316 342 IPR001680 GO:0005515
Vian5g01445 467 Pfam WD domain, G-beta repeat 114 140 IPR001680 GO:0005515
Vian5g01445 467 Pfam WD domain, G-beta repeat 395 444 IPR001680 GO:0005515
Vian5g01445 467 Pfam WD domain, G-beta repeat 223 251 IPR001680 GO:0005515
Vian5g01445 467 Pfam WD domain, G-beta repeat 354 386 IPR001680 GO:0005515
Vian5g01445 467 SMART WD40_4 349 386 IPR001680 GO:0005515
Vian5g01445 467 SMART WD40_4 304 343 IPR001680 GO:0005515
Vian5g01445 467 SMART WD40_4 255 293 IPR001680 GO:0005515
Vian5g01445 467 SMART WD40_4 103 140 IPR001680 GO:0005515
Vian5g01445 467 SMART WD40_4 217 252 IPR001680 GO:0005515
Vian5g01445 467 SMART WD40_4 141 178 IPR001680 GO:0005515
Vian5g01445 467 SMART WD40_4 392 445 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01445 Vian-Chr5 37078943 37080346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01445 165 386 Acyl Lipid Metabolism Gene Families AT3G18860 26.337 7.95e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01445 - - gmx:100807706 710.679