Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01437 ATGATGCCTCACCAAAACGGGATTCCCCCACTAGTGACTGCACTGAAATCTTCAGCCGAAAAAAATGCAGCGAGTTTTCACTTTCCTGGACACAACAGAGGGCGTGCTGCACCTGCTTCCATGACTGCGCTCATTGGAAGAAAACCCTTTGTTCATGACTTGCCTGTGCTTCCAGAACTTGACTATCTCTTTTCTCCCAACGGTCCCATTTTAGAAGCACAGCTTGAAGCAGCAAAGCTCTTTGGATCCTCACACACATGGTTTCTTGTCGGTGGTACAACTTCTGGAATCCAGGCAGCCATAATGGCAACATGTTCTCCTGGGGATGTTCTCATCCTTCCAAGGAATTCTCATGTATCAGCTATATCTGCATTGGTATTATCTGGTGCAGTGCCTAAGTACATCATTCCTCACTTTCACAATGATTGGGACATTGCTGCTGCTATCACTCCATCTCAGGTATTGCAAGCTATCCGGGAAGTAGAAATGGAAGGGAAAAAAGCAGCAGCAGTGTTCATCACTTCACCAACTTATCATGGTCTTTGCAGTGACTTGAGCAGGATTTCTGAGCTGTGTCACTCTCATAAAATCCCTTTGATTGTTGATGAAGCCCATGGCGCACATTTTGCATTTCATTCTAAACTGCCTAAGTCAGCTCTCCAGCAAGGTGCTGATCTGGTCGTGCAGTCCACTCACAAAGTTTTATGCTCTCTTACACAGTCATCCATGCTGCACATGTCAGGCAACATTGTAGACAAGGACAGAGTTTCTGCATGTCTCCGAACTCTCCAAACCACAAGCCCTAGTTTTCTGCTTCTGGCATCCCTTGATGCTGCTAGAGCTCAACTCAGTGAGAACCCTGATACAGTATTCCGCCAAGCAATTGCATTAGCCGATGAAACAAAATCTGTGCTAAAACAAATACCTGGTATCTCAGTACTTGATAATTCAAGCTTCCCAGCCTCTCCTGCAGTTGATCCATTGCGTCTCACTGTAGGGTTTTGGAATCTTGGTTTATCAGGTTCTGAAGCAGACAAAATCTTATACAAGGATTATGATGTTATCTGTGAAATATTTGGGAATAGATCAATAACTTATGCACTTAATCTTGGGACTTGTAGGGAGCATGTCCACAGGCTTGTGTTGGGTATTAAGCGTTTGGCTGCAACATATGGTTCCATTCCAAAAGCAGAGAAGAAAGTGGTGAATGTTCATGCACCCTTTGATGATGTAATAATGAGTATGATCCCTAGAGATGCGTTTTTTGCAAGTAAAAGAAAAGTGGCAATAAGAGAGAGCATTGGTGAGGTTGCAGGGGAGATTATATGTCCCTACCCTCCTGGTGTACCAATATTGATCCCTGGTGAGGTTGTAACTGAAAACATTGTTGATTATCTGCTTCTTGTTACAAGTAAAGGCGCTGAAGTTAATGGGGCATCTGACTCTTCGCTTTCTTCGATAGTTGTCTGCGGTAAATTAGCAGCTGGGAAGGAGCACCCTTAA 1503 0.4411 MMPHQNGIPPLVTALKSSAEKNAASFHFPGHNRGRAAPASMTALIGRKPFVHDLPVLPELDYLFSPNGPILEAQLEAAKLFGSSHTWFLVGGTTSGIQAAIMATCSPGDVLILPRNSHVSAISALVLSGAVPKYIIPHFHNDWDIAAAITPSQVLQAIREVEMEGKKAAAVFITSPTYHGLCSDLSRISELCHSHKIPLIVDEAHGAHFAFHSKLPKSALQQGADLVVQSTHKVLCSLTQSSMLHMSGNIVDKDRVSACLRTLQTTSPSFLLLASLDAARAQLSENPDTVFRQAIALADETKSVLKQIPGISVLDNSSFPASPAVDPLRLTVGFWNLGLSGSEADKILYKDYDVICEIFGNRSITYALNLGTCREHVHRLVLGIKRLAATYGSIPKAEKKVVNVHAPFDDVIMSMIPRDAFFASKRKVAIRESIGEVAGEIICPYPPGVPILIPGEVVTENIVDYLLLVTSKGAEVNGASDSSLSSIVVCGKLAAGKEHP 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01437 500 CDD Orn_deC_like 10 298 IPR000310 GO:0003824
Vian5g01437 500 Gene3D - 9 289 IPR015421 GO:0003824
Vian5g01437 500 Pfam Orn/Lys/Arg decarboxylase, major domain 9 307 IPR000310 GO:0003824
Vian5g01437 500 Pfam Orn/Lys/Arg decarboxylase, C-terminal domain 413 473 IPR008286 GO:0003824
Vian5g01437 500 Gene3D - 390 489 - -
Vian5g01437 500 PANTHER ARGININE DECARBOXYLASE 6 490 - -
Vian5g01437 500 SUPERFAMILY PLP-dependent transferases 9 390 IPR015424 -
Vian5g01437 500 SUPERFAMILY Ornithine decarboxylase C-terminal domain 346 491 IPR036633 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01437 Vian-Chr5 37011917 37013693 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01437 - - vum:124823144 789.26