Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01434 ATGACGAGCAAGGTTGCAGGGTTTGTGACAACCTTATTCATGATGGTGATGATGATGGTGCCAAAAACCGTGAGCGCCGAAAACATAGATAGAATCGTCACACAACAATTCTTCGACATGATAATCAACCAGGCCGATGGTGATTGTCCAGGGAAGAACTTCTACTCACGTGATGCTTTCCTCAAAGCTCACAATTCCTACCATCGATTTGGTAATATGAATACTGAAGATGATTCCAAACGTGAAGTTGCAGCCGCTTTTGCTCATTTCACCCATGAAACTGGACAAGAGATTGGAGGGGCATCAAGGGACTACTGTGATGAAAGCAACATTGAGTTTCCATGTGCACCTAACAAAGGGTACTATGGTCGTGGACCTATCCAACTTTCATGGAACTTCAACTATGGACCAGCAGGACAGAACATAGGTTTCGATGGGTTGAATGCTCCACAGACAGTGGCCAATGACCCTGTTGTGTCCTTCAAGACAGCATTGTGGTACTGGATGGAGTTTGTTCGCCCTGTCATGAACCAGGGCTTTGGTGCAACCATTAGAGCCATCAATGGCTACCTTGAATGTAATCAAGGAAACCCTGAAACTGTCAATGCTCGTGTTTATTATTACACCCAGTATTGTTCTCAACTTGGTGTTGCTCCTGTGATCACACAGTTTGATAGAATTCTCCATCAAGCGATGTGGAACAACAAGGTGCAAAACATGAACGCCGGAGTAACGAGAGTGACGATGAGTTTCTTAGCGTTGATGCTAATAGGGTGCCAACAAGGTGCTTGCTATGGCACTGACACAGCCAACCATGTTACTGTGGCTGACATTGTCACAACTGAATTCTTCAACGCCATATTAGACGAAGGTGACGACGATGCAGATTGTCCAGGCAAGGATTTCTATTCTCGACAAGCCTTCCTGCATGCTCTCAATTCCTACAAACAGTTTGGTAGGAGTGGTTCTGTAGATGACTCCAAACGTGAAATTGCAGCTGCTTTTGCTCATTTCACCCATGAAACTCAACATTTTTGCTACATAGAAGAGACTGAAGGTGAATCAAAGGACTATTGTGACGAAAGCAACAGTGATCAGTATCCGTGTGCGGCTGACAAGGAGTACTATGGTCGTGGGCCGATTCAACTGAAATGGAACTACAACTACGGAGCAGCAGGAGAAAGCATTGGTTTTGATGGGTTGAAGGCACCGGAGACAGTGGGGAGTGACCCAGTGGTGTCGTTCAAGACAGCACTGTGGTACTGGACAGAAAATGTGAGCCCTGTGATGGAACAAGGATTTGGTGAAACCATTAGAGCAATGAAAGGTGAAGTTGAATGTGATGGAGGAAACCCTGATGCTGTTCAGGCTCGTGTTGATTACTACACACAATACTGTTCGCAGCTTGGTGTTGCTCCTGTGAGGCAAGAGGAACAAGAAAGTGTGTTAGATTTGTGCTTCTCTTTTTGGACTCCATTAGCTTTTTCGGTGGACATGGGTTTCAATGGATTATTCCGTGTTGACCAAGGATGTTTGGAAGTTGCCCAGCAATGTCAAAGCATTTTGGTTGACAAATTTCGAAGATTAGTTGTTAAAGTCGAATCCTCAGAGACAAGGGAATGCACTACTGCTATGTTTAATGCCAATTCACGTCGAAACTTTCTTGGGTTGGCTCTTGGAGTCTCAGGCCTCTTCATCGGTTCAATGGATGCCAGTGGAGCTGGTTTGCCCCCAGAGGAAAAGCCAAAACTGTGTGATGAAACTTGTGAGAAAGAGCTTGAAAATGTATGTTCACTGGAGAAAGGACAGTTTTACATTTTCCGCGTTGGTTCTGGTCAGGTTATACCGGGACTTGATGAAGGTATTCTGAGCATGAAAGTGGGAGGGAAGCGCCGACTGTACATACCTGGATCATTGGCATTTCCAAAAGGCCTTACTTCTGCTCCTGGAAGACCGAGGGTGGCTCCAAGCAGTCCAGTCATATTTGATGTTAGTTTGGAATATATACCGGGGCTTGAAGTGGACGAGGAATAA 2034 0.4533 MTSKVAGFVTTLFMMVMMMVPKTVSAENIDRIVTQQFFDMIINQADGDCPGKNFYSRDAFLKAHNSYHRFGNMNTEDDSKREVAAAFAHFTHETGQEIGGASRDYCDESNIEFPCAPNKGYYGRGPIQLSWNFNYGPAGQNIGFDGLNAPQTVANDPVVSFKTALWYWMEFVRPVMNQGFGATIRAINGYLECNQGNPETVNARVYYYTQYCSQLGVAPVITQFDRILHQAMWNNKVQNMNAGVTRVTMSFLALMLIGCQQGACYGTDTANHVTVADIVTTEFFNAILDEGDDDADCPGKDFYSRQAFLHALNSYKQFGRSGSVDDSKREIAAAFAHFTHETQHFCYIEETEGESKDYCDESNSDQYPCAADKEYYGRGPIQLKWNYNYGAAGESIGFDGLKAPETVGSDPVVSFKTALWYWTENVSPVMEQGFGETIRAMKGEVECDGGNPDAVQARVDYYTQYCSQLGVAPVRQEEQESVLDLCFSFWTPLAFSVDMGFNGLFRVDQGCLEVAQQCQSILVDKFRRLVVKVESSETRECTTAMFNANSRRNFLGLALGVSGLFIGSMDASGAGLPPEEKPKLCDETCEKELENVCSLEKGQFYIFRVGSGQVIPGLDEGILSMKVGGKRRLYIPGSLAFPKGLTSAPGRPRVAPSSPVIFDVSLEYIPGLEVDEE 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01434 677 ProSitePatterns Chitinases family 19 signature 1. 297 319 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vian5g01434 677 Pfam Chitinase class I 278 426 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vian5g01434 677 Pfam Chitinase class I 178 219 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vian5g01434 677 Pfam Chitinase class I 32 170 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vian5g01434 677 SUPERFAMILY Lysozyme-like 29 218 IPR023346 -
Vian5g01434 677 ProSitePatterns Chitinases family 19 signature 2. 159 169 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vian5g01434 677 Gene3D Endochitinase, domain 2 352 408 - -
Vian5g01434 677 FunFam Endochitinase (Chitinase) 349 409 - -
Vian5g01434 677 PANTHER CHITINASE-RELATED 258 475 - -
Vian5g01434 677 ProSitePatterns Chitinases family 19 signature 1. 49 71 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vian5g01434 677 Gene3D Endochitinase, domain 2 97 153 - -
Vian5g01434 677 Gene3D - 28 222 - -
Vian5g01434 677 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 598 670 IPR001179 GO:0003755
Vian5g01434 677 FunFam Endochitinase (Chitinase) 96 155 - -
Vian5g01434 677 CDD chitinase_GH19 33 219 - -
Vian5g01434 677 SUPERFAMILY FKBP-like 598 667 - -
Vian5g01434 677 CDD chitinase_GH19 279 473 - -
Vian5g01434 677 Gene3D - 273 478 - -
Vian5g01434 677 FunFam Endochitinase PR4 269 357 - -
Vian5g01434 677 Gene3D - 583 667 IPR046357 GO:0003755
Vian5g01434 677 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 598 666 IPR001179 GO:0003755
Vian5g01434 677 SUPERFAMILY Lysozyme-like 275 473 IPR023346 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01434 Vian-Chr5 36979831 36993676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01434 257 473 Glycoside Hydrolase AT3G54420 66.820 1.60e-100 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01434 K01183 - atr:18448760 513.842