Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01432 ATGGCAGTCAACGACGCCGATCAATCTAACAGGCCTCATAGGAATCGCCAATCAGGTTCCAAATCCACCAAGAAGAAGAGTAAGAAGAAGCAGAATCAGGATGCTGGAGGAGAGGATCAGAAAAACCAAAACCCTAAGGCATTCGCCTATTCTTCCTCCAACAAAGCCAAAAGGTTGCAATCACGTGCCGTGGAGAAAGAGCAGCGCCGCCTTCACGCTCCCATCATTGACCGCTCCTACGGCGAACCCGCTCCATACGTCGTCGTTGTGCAGGGTCCTCCTCAGGTTGGGAAGTCACTGTTGATTAAATCTTTGGTTAAGCATTACACGAAACATAATTTGCCCGATGTTCGAGGTCCAATTACTATTGTCTCAGGAAAGCAAAGGCGGGTTCAGTTTGTGGAATGCCCGAATGATATCAATGGCATGATAGACGCGGCAAAGTTTGCAGATCTAGCGCTACTTCTCATAGATGGGAGTTATGGTTTTGAAATGGAAACCTTTGAGTTCCTAAATATATTGCAAGTTCATGGGTTCCCAAAGGTCATGGGGGTTCTCACCCATCTTGATAAATTCAAGGATGTGAAAAAGTTGAGGAAAACAAAACAAAGACTTAAACACCGTTTCTGGACGGAGATATATGATGGTGCTAAACTATTTTACTTATCAGGCCTAATTCATGGAAAGTATGTTAAGCGGGAGGTGCACAATCTTGCTAGATTTATTTCAGTCATGAAGTTTCATCCTTTATCTTGGCGAACTTCCCACCCCTATGTTTTAGTTGACCGTTTTGAAGACATCACTCCTCCTGAAAAAGTGCATGCAAATGATAAATGTGACAGAAAAGTCACCCTTTATGGTTATCTTAGAGGATGTAATTTGAAAAAGGGCAATAAGGTACACATAGCAGGAGTGGGTGATTATAGTTTAACTGCTATTACTGCTTTACCGGATCCTTGTCCTCTCCCATCTGCTGCAAAAAAGAAAGGGCTGCGGGATAAGGAAAAATTATTCCATGCTCCTATGTCTGGACTTGGGGATCTTTTATATGACAAAGATGCTGTATACATAAATATTAACGACCACCTTGTTCAATTCTCAAAAGTTGATGGTGAAAGCTCTGCTATGACAAGCAAAGGAAAGGACAGAGATGTAGGAGAGCTTTTAGTGAAATCCCTGCAGAATACCAAATACTCAATCAATGAAAAGCTGGAGAACAGCTCTATCAGTTTTTTTGGTGAAAAGCGTAAAGTGTCATCAGAAGCTCTGACTGACACACATGGTGAAAACAAAGATGTAGAACAGAATGAAGCTGCTATAAACACAAAGGATTCAGATGGTTCAGAATCATCTGATCAGGATGAAGAGGACACCATGAAAGAGAGTGAAGCCTCTGATTCCGACAATGAAGATTCACCAAATAGCAATGCTTTGAATGGAGACCAAATACAAGAACATATTGAGTTTCATGATGGAAGACGAAGGCGGAGAGCGATATTTGGAAATGATATTGATCACAGTGATGTGATGGATTCAGAAGGAGACGAGGATGCAGCTGCTAGTGATGATCTTGCATCTTCTGATTCAGGATCTTCAGAAGAAGAGGAGGAAGATGATAATGATAATGATAATGATGACACAAATGAAAATGGCATGGGTAATGTTTCCAAGTGGAAAGAGTCTTTGGCAGAAAGAACTCTGTCACGGAAAGCTCCTAGCTTGATGCAACTTGTGTATGGGGAATCTACTAATAATTCAACCACAGCAAACTCTGAGAATGATAATAGTGGAGATGAGGAAAGTGATGATGACTTTTTTAAGCCTATAGAAGAAGTGAAAAAGCAAAGCATGAGAGATGGATTGGATGATGATGGAGTGGTCAATACTGAGGATTGTTCCAAGTGCACACAATTTGTGCATCAGAGATGGGATGAGGAGATTCGTAACCGCTTTGTGTCTGGCAATTTGGCAAAAGCTGCACTCAGAAATGCATTACAAACAGCAAATACTGAAGGGGAAAATGAAGATGTCTATGGTGACTTTGAAGATTTGGAAACAGGAGAAAAACATGAGAATAATCAGACAGATGATGCTCTTGCAGCAACAACACTAAAGGGTGATGATTTGGAAGCTGAGGAGCGGAGGCTTAAGAAACGTGCTCTCCGTGCAAAATTTGATTCTCAATTTGACAAAGACCCTGGGTCACCAGAAGAAGACACTGATAATGAAAGTGAACGCAAGTTCCATCGTGGTCAAGCTAATGAAAGTAGCTATTTTGACAAGTTGAAGGAGGAGATTGAACTCCAGAAACAAAGGAATATAGCTGAACTCAATGATCTTGATGAAGATACCCGATTGGAGATAGAAGGGTTCCGAACAGGGACATACCTAAGATTGGAGATTGATGAGGTTCCTTGCGAGATGGTTGAATACTTTGATCCCTACCATCCAATATTGGTTGGAGGGGTTGGTATAGGGGAGGAAAATGTTGGATATATGCAGACAAGGTTAAAGCGGCACAGGTGGCACAAGAAAGTTTTGAAGACTAGAGATCCAATCATTGTATCTGTTGGATGGAGGCGTTACCAGACAACCCCAGTTTATGCCATTGAGGATAGCAATGGAAGGCATCGTATGCTTAAGTATACTCCAGAACACATGCATTGCCTTGCTATGTTTTGGGGCCCTCTTGCTCCTCCCAACACTGGGGTTGTAGCTGTTCAGAATTTAGCAAACAATCAGGCAACATTTAGGATTACTGCCACTGCAGTTGTGCTTGAGTTTAATCATGCAGCAAGGATAGTGAAGAAAATCAAATTGGTTGGTTATCCATGCAAGATATTCAAGAAGACAGCACTTATCAAGGACATGTTTACTTCGGATCTTGAAGTAGCTCGGTTTGAAGGTGCAGCTATTCGAACAGTCAGTGGGATTAGGGGCCAGGTCAAGAAGGCCGCAAAAGAAGAAATAGGTAATCAAGCAAAAAAGAAGGGTGGGCAAACTAAGGAAGGAATTGCTAGGTGCACTTTTGAGGATAAAATCCTGATGAGTGACATTGTTTTCCTGCGTGCATGGACTCAAGTTGAAGTTCCTCAGTTTTATAATCCATTGACAACTGCATTGCAGCCTCGTGAAAAGACCTGGAAAGGAATGAGGACTGTTGCAGAATTGAGAAGAGAACACAATCTTCCTGTTCCTGTAAATAAAGATTCACTTTACAAGAAAATTGAAAGAAAACCTAGAAAGTTCAATCCATTGGTGATTCCCAAGTCTCTTCAAGCAAGTCTTCCCTTTGCATCAAAACCCAAGGATATACCCAAGCGAAAGAAGCCCTTACTTGAAGAGAGAAGGGGAAGGGGTGTTGTCATGGAACCTCGAGAGCGTAAAGTTCACGCTCTTGTTCAACATCTCCAGTTAATAAATAGCGAGAAGATGAAAAAGCGAAAGCTTAAGGAAGAGAAGAAAAGGAAAGAACTAGAAGCAGAGAGAGCAAAAGACGAGCAGTTGTCGAAGAAGCGCCGGAGAGAGGAAAGACGTGAGAAATACCGCGCACAAGACAAACAGAATAAGAAAATTCGAAGAGCAGAGGTTTGA 3594 0.4193 MAVNDADQSNRPHRNRQSGSKSTKKKSKKKQNQDAGGEDQKNQNPKAFAYSSSNKAKRLQSRAVEKEQRRLHAPIIDRSYGEPAPYVVVVQGPPQVGKSLLIKSLVKHYTKHNLPDVRGPITIVSGKQRRVQFVECPNDINGMIDAAKFADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDITPPEKVHANDKCDRKVTLYGYLRGCNLKKGNKVHIAGVGDYSLTAITALPDPCPLPSAAKKKGLRDKEKLFHAPMSGLGDLLYDKDAVYININDHLVQFSKVDGESSAMTSKGKDRDVGELLVKSLQNTKYSINEKLENSSISFFGEKRKVSSEALTDTHGENKDVEQNEAAINTKDSDGSESSDQDEEDTMKESEASDSDNEDSPNSNALNGDQIQEHIEFHDGRRRRRAIFGNDIDHSDVMDSEGDEDAAASDDLASSDSGSSEEEEEDDNDNDNDDTNENGMGNVSKWKESLAERTLSRKAPSLMQLVYGESTNNSTTANSENDNSGDEESDDDFFKPIEEVKKQSMRDGLDDDGVVNTEDCSKCTQFVHQRWDEEIRNRFVSGNLAKAALRNALQTANTEGENEDVYGDFEDLETGEKHENNQTDDALAATTLKGDDLEAEERRLKKRALRAKFDSQFDKDPGSPEEDTDNESERKFHRGQANESSYFDKLKEEIELQKQRNIAELNDLDEDTRLEIEGFRTGTYLRLEIDEVPCEMVEYFDPYHPILVGGVGIGEENVGYMQTRLKRHRWHKKVLKTRDPIIVSVGWRRYQTTPVYAIEDSNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGVVAVQNLANNQATFRITATAVVLEFNHAARIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKAAKEEIGNQAKKKGGQTKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPREKTWKGMRTVAELRREHNLPVPVNKDSLYKKIERKPRKFNPLVIPKSLQASLPFASKPKDIPKRKKPLLEERRGRGVVMEPRERKVHALVQHLQLINSEKMKKRKLKEEKKRKELEAERAKDEQLSKKRRREERREKYRAQDKQNKKIRRAEV 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01432 1197 Coils Coil 1133 1179 - -
Vian5g01432 1197 SMART DUF663_2 691 1028 IPR007034 -
Vian5g01432 1197 MobiDBLite consensus disorder prediction 37 58 - -
Vian5g01432 1197 MobiDBLite consensus disorder prediction 449 464 - -
Vian5g01432 1197 MobiDBLite consensus disorder prediction 421 490 - -
Vian5g01432 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 222 IPR027417 -
Vian5g01432 1197 FunFam BMS1 ribosome biogenesis factor 86 248 - -
Vian5g01432 1197 MobiDBLite consensus disorder prediction 577 594 - -
Vian5g01432 1197 SMART aarp2cn2 234 320 IPR012948 GO:0005634|GO:0042254
Vian5g01432 1197 PANTHER RIBOSOME BIOGENESIS PROTEIN 6 1179 IPR039761 GO:0042254
Vian5g01432 1197 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 708 1029 IPR007034 -
Vian5g01432 1197 MobiDBLite consensus disorder prediction 1102 1117 - -
Vian5g01432 1197 MobiDBLite consensus disorder prediction 509 546 - -
Vian5g01432 1197 Gene3D - 86 248 IPR027417 -
Vian5g01432 1197 MobiDBLite consensus disorder prediction 726 754 - -
Vian5g01432 1197 CDD BMS1 47 276 IPR037875 GO:0005525
Vian5g01432 1197 MobiDBLite consensus disorder prediction 1 68 - -
Vian5g01432 1197 Coils Coil 763 783 - -
Vian5g01432 1197 Pfam AARP2CN (NUC121) domain 234 319 IPR012948 GO:0005634|GO:0042254
Vian5g01432 1197 MobiDBLite consensus disorder prediction 504 606 - -
Vian5g01432 1197 MobiDBLite consensus disorder prediction 421 439 - -
Vian5g01432 1197 MobiDBLite consensus disorder prediction 1098 1117 - -
Vian5g01432 1197 MobiDBLite consensus disorder prediction 1143 1197 - -
Vian5g01432 1197 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 84 248 IPR030387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01432 Vian-Chr5 36950097 36963060 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01432 K14569 - gmx:100792176 1942.16