Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01425 ATGGCCAATGGCAGCACTACCCAGTTGTTCAAGCTTCTGCTTTTCCTTCTGATTCTTCACTCTGCACTCGCTGAGATCTTCTTCGAAGAGAGATTCGAAGATGGATGGAAGAGCCGTTGGGTTTTGTCGGACTGGAAAAGGAGCGAGGGAAAAGCAGGTACCTTCAAGCACACAGCAGGGAAATGGTCTGGAGATCCTGATGACAAAGGTCTTCAAACACATAACGATGCGAAACATTTTGCCATATCTGCAAAGATACCCGAGTTTAGCAACAAGGACAGAACGCTTGTGGTGCAGTATTCCATTAGGTTGGAGCAGGACATTGAATGCGGTGGCGGTTACATCAAACTTCTCTCTGGTTATGTCAATCAGAAGAAGTTTGGTGGTGATACCCCTTATAGTTTGATGTTTGGACCAGATATATGTGGCACACAGACTAAGAAGCTCCATCTTATACTATCATACCAAGGGCAGAATTACCCTATTAGGAAGGAACTGCAATGTGAAACGGATAAATTGACTCATTTCTATACATTTATTCTAAGGCCTGATGCCTCTTATAGTATCCTTGTTGATAACCGGGAAAGAGATTCGGGAAGCATGTATGCAGATTGGGACATCCTTCCTCCGAGGAAAATCAAGGATGTCAAAGCAAAAAAGCCAGCAGACTGGGATGATAGAGAGTACATTGAAGATCCTAATGATGTCAAACCAGAGGGATATGATTCAATTCCAGCTGAAATTCCTGATCCAAAAGCCAAGAAGCCTGCTGACTGGGATGATGATGATGATGGACTATGGAAGCCCTCAAAAGTTCCTAATCCAGCATACAAAGGACCATGGAAACGCAAGTGGAAGATTCCATGGATTGATAACCCAGAATTTGAGGATGATCCCGATCTTTATGTTCTCAGGCCAATTAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAGGCAGGTTCAGTTTACGACAACATCTTAATTTGTGATGATCCGCAGTATGCAAAGCAGGTTGTGGATGAATTTATGGCTAACAATAGAGAGTCCGAAAAAGAAGCTTTTGAAGAAGCAGAAAAAGAAAGAAGGGCTAGGGAAGAAGAGGTGACCATTCAAAGCCTAAATGCTTCAGCAGAGGCACAGAGAGCACGAGAAGAGGGTGAAAAAAGGAGAAAGGAGAGGGATCATAAATATGGAAACAGGAGGCGGCGTCGAAGGCCGGATCCCCACGATACGTGTGATTTGGTGAAGTCTGTATCTGATCAGCACCTCAAAAAGTGGCAAAGTGTGCATTGA 1293 0.4408 MANGSTTQLFKLLLFLLILHSALAEIFFEERFEDGWKSRWVLSDWKRSEGKAGTFKHTAGKWSGDPDDKGLQTHNDAKHFAISAKIPEFSNKDRTLVVQYSIRLEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDICGTQTKKLHLILSYQGQNYPIRKELQCETDKLTHFYTFILRPDASYSILVDNRERDSGSMYADWDILPPRKIKDVKAKKPADWDDREYIEDPNDVKPEGYDSIPAEIPDPKAKKPADWDDDDDGLWKPSKVPNPAYKGPWKRKWKIPWIDNPEFEDDPDLYVLRPIKYVGIEVWQVKAGSVYDNILICDDPQYAKQVVDEFMANNRESEKEAFEEAEKERRAREEEVTIQSLNASAEAQRAREEGEKRRKERDHKYGNRRRRRRPDPHDTCDLVKSVSDQHLKKWQSVH 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01425 430 Gene3D - 25 370 - -
Vian5g01425 430 SUPERFAMILY P-domain of calnexin/calreticulin 206 311 IPR009033 GO:0005509|GO:0005515
Vian5g01425 430 MobiDBLite consensus disorder prediction 349 416 - -
Vian5g01425 430 Coils Coil 347 367 - -
Vian5g01425 430 ProSitePatterns Calreticulin family signature 1. 103 118 IPR018124 GO:0005509
Vian5g01425 430 Gene3D Calreticulin/calnexin, P domain 210 301 IPR009033 GO:0005509|GO:0005515
Vian5g01425 430 MobiDBLite consensus disorder prediction 248 268 - -
Vian5g01425 430 PANTHER CALRETICULIN AND CALNEXIN 11 369 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vian5g01425 430 ProSitePatterns Calreticulin family signature 2. 135 143 IPR018124 GO:0005509
Vian5g01425 430 Coils Coil 374 394 - -
Vian5g01425 430 FunFam Calreticulin 210 301 - -
Vian5g01425 430 PRINTS Calreticulin signature 105 123 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vian5g01425 430 PRINTS Calreticulin signature 276 295 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vian5g01425 430 PRINTS Calreticulin signature 131 147 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vian5g01425 430 PRINTS Calreticulin signature 220 233 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vian5g01425 430 PRINTS Calreticulin signature 309 329 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vian5g01425 430 PRINTS Calreticulin signature 248 270 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vian5g01425 430 PIRSF Calreticulin 5 407 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vian5g01425 430 MobiDBLite consensus disorder prediction 349 368 - -
Vian5g01425 430 MobiDBLite consensus disorder prediction 224 272 - -
Vian5g01425 430 FunFam Calreticulin 1b 25 209 - -
Vian5g01425 430 MobiDBLite consensus disorder prediction 224 238 - -
Vian5g01425 430 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 223 IPR013320 -
Vian5g01425 430 Pfam Calreticulin family 265 328 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vian5g01425 430 Pfam Calreticulin family 29 263 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01425 Vian-Chr5 36883065 36888128 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01425 8 336 Miscellaneous Gene Families AT5G61790 33.668 4.46e-57 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01425 K08057 - gmx:100802428 696.041