Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01390 ATGGCCATCTACAGCTCTCTCTTTCTCGGTCTCTTTGCTCTTCTTCTTGTTAGATCTTCCAAAGTTACATGCGAAGAAACAGTTTCAGTTTCACCAACTATTGACATTTCAATCAATCGCAACACTTTCCCTCAAGGCTTCATCTTTGGAGCTGGATCTTCCTCTTACCAGCTAAGATCCAGGATAGAAGCAACGGAGACGTGGCCATTGACTCCTACCATCATTACAAGTATGAGATCACTTGTGAGAACAAGGTTGCCAAAGTTTACTGCAGAGCAAGCTAGACTTCTTATTGGTTCATTCGATTTTATTGGTCTAAACTATTACTCTACAACATATGCCACCGATGCACCTCAACTGAGCAATGACAACCCTAGCTACTTAACCGATTCTCTTGTCACTGCTGCATTTGAACGCGATGGGAAACCTATTGGAATCAAGATTGCTTCTGATTGGTTATACGTTTATCCCAGAGGAATTCGTGATCTCGTGTTATATACCAAGGAAAAATATAACAATCCTTTGATTTACATCACAGAGAATGGTGTCAACGAGTATAATGAACCCTCCTTATCACTTGAAGAATCTCTTATGGACACTTTCAGAATAGATTATCATTATCGTCATCTCTATTATCTTCTGTCCGCTATTAGGAATGGAGCAAATGTGAAGGGATATTACGTGTGGTCTTTCTTCGACAATTTTGAATGGACTTCGGGTTATACATCACGATTTGGAATGATCTTCATAGATTACAAAAATGGTTTGAAAAGATATCCAAAACTATCAGCAACGTGGTACAAGAACTTCCTCAAAAAAAAAACCAGACTTTATAGCTCTAGTAAATAA 849 0.3863 MAIYSSLFLGLFALLLVRSSKVTCEETVSVSPTIDISINRNTFPQGFIFGAGSSSYQLRSRIEATETWPLTPTIITSMRSLVRTRLPKFTAEQARLLIGSFDFIGLNYYSTTYATDAPQLSNDNPSYLTDSLVTAAFERDGKPIGIKIASDWLYVYPRGIRDLVLYTKEKYNNPLIYITENGVNEYNEPSLSLEESLMDTFRIDYHYRHLYYLLSAIRNGANVKGYYVWSFFDNFEWTSGYTSRFGMIFIDYKNGLKRYPKLSATWYKNFLKKKTRLYSSSK 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01390 282 ProSitePatterns Glycosyl hydrolases family 1 active site. 176 184 IPR018120 -
Vian5g01390 282 PANTHER GLYCOSYL HYDROLASE 76 275 IPR001360 GO:0004553|GO:0005975
Vian5g01390 282 PRINTS Glycosyl hydrolase family 1 signature 199 210 IPR001360 GO:0004553|GO:0005975
Vian5g01390 282 PRINTS Glycosyl hydrolase family 1 signature 176 184 IPR001360 GO:0004553|GO:0005975
Vian5g01390 282 PRINTS Glycosyl hydrolase family 1 signature 220 237 IPR001360 GO:0004553|GO:0005975
Vian5g01390 282 PRINTS Glycosyl hydrolase family 1 signature 244 256 IPR001360 GO:0004553|GO:0005975
Vian5g01390 282 PRINTS Glycosyl hydrolase family 1 signature 100 114 IPR001360 GO:0004553|GO:0005975
Vian5g01390 282 SUPERFAMILY (Trans)glycosidases 76 272 IPR017853 -
Vian5g01390 282 Pfam Glycosyl hydrolase family 1 77 274 IPR001360 GO:0004553|GO:0005975
Vian5g01390 282 Gene3D Glycosidases 66 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01390 Vian-Chr5 36575029 36577844 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01390 76 274 Glycoside Hydrolase AT2G44450 51.759 2.36e-70 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01390 K01188 - gmx:100776708 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01390 5 36575029 36577844 Vian5g01390 5 36575029 36577844 ECH