Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01360 ATGCATAATTACTTCCCAATCTATGCCATGGCACGCACTCTGACACTACCCCCCATCTCTTACACTCTTGCTAAAACCCTAAAACCCATTTCTCCATTCCACAAATCTATTCCCTTCTTCTCTTCAATCCTTTCTCGCCCAAAGCTCACTCGCCGCTCCCTATCCCGTTCCGTCCTGCGCTCTACCGTCGGCAAATTATCCGGCAGTGTCGATGATGAAGAAGAATCAGAAGAACTGGACGAGCTCGATGTCATCGCCCTCGAGCAAGAAGCAAAGGACGCAGCCCAAGCTTATTCAAACTCTCTGTCTCAAGTTCTGAGCATAGACGAGGAGAAAAATGATCGCAAGGAAACAGCTCAATCCCGCAGGAGGAGTGCACGTAGAACAAAATCTATCCCGGACAATCTTCTCCAAAGGGTTGCAATTGTTGGAAGGCCAAATGTTGGCAAGTCAGCATTATTTAATCGTCTTGTCGGGGGAAACAGGGCTATTGTAGTTGATGAACCCGGGGTTACCAGGGATCGTTTATATGGTCGATCGTATTGGGGAGAGCATGAGTTCATGGTAGTGGACACAGGCGGGGTTATAACTGTTTCAAAGTCGCAAGCTACTGTTATGGAAGAGCTGGCTATTACTACTACCATTGGTATGGATGGCATTCCACTTGCTGTTAGAGAAGCAGCTGTTGCCAGGATGCCCTCAATGATCGAGAGACAAGCAACTGCAGCTGTGGAAGAATCATCTGTTATTATTTTCCTGGTCGATGGTCAGGTATCTGTGGATGAGTGTGTTGGGAAAGTCCCACTAGTGGTTATTCCTTATTTGTACGGAGGACTAACAGCAGCTGATGAGGAGATTGCTGATTGGCTACGTAAAAACTACTCAGATAAATATGTCATTCTCGCAGTTAACAAGTGTGAATCTCCTCGCAAAAGAATTATGCAGGCATCTGAATTTTGGTCCCTTGGATTTGAACCACTTCCAATATCAGCAATCTCAGGGACTGGAACTGGAGAGCTTCTTGACCTTGTTTGTTCTGGCTTACAGAAAGTTGAGGAATCAAATATTATTGATGAAGAAGAAGATTATGTTCCCGCAATTTCAATTGTTGGTAGACCAAATGTTGGCAAAAGTAGCATTTTGAATGCACTGGTTGGTGAGGACAGAACAATAGTTAGCCCCATCAGTGGCACTACTCGTGATGCTATTGATACTGAATTTACTGGACCAGATGGACAGAAGTTCCAACTTATTGATACTGCTGGAATCAGGAAAAGAGCAGCCATAGTATCAGCTGGGAGTACAACAGAGGCTTTGTCAGTGAATCGAGCATTTCGTGCTATTCGTCGTTCTGATGTTGTTGCTCTTGTCATTGAGGCCATGGCTTGTATCACAGAACAGGACTACAAAATAGCTGAGAGGATAGAAAAAGAAGGAAAAGGTTGTGTGATAGTTGTAAACAAGTGGGATACGATACCAAATAAAAAGCAGCAGACTGCATTACACTATGAGGAAGATGTCAGGGAGAAGCTTCGCTCACTTGATTGGGCTCCAATTGTTTATTCTACTGCTATAGCTGGTCACAGTGTTGACAAGATTATTGTTGCAGCTAGTGAAGTTGAAAAGGAAAGATCTAGAAGACTTGGCACTTCTATATTAAATCAAGTAGTTCTGGAAGCAGTAGCTTTTAAGCCTCCTCCTAGGACACGTGGTGGAAAAAGAGGGCGTGTTTACTATTGCACTCAGGCTGCTATAAGGCCACCTACATTTGTGTTCTTCGTCAATGATGCACAACTTTTTCCCGAGACTTACAGGCGGTATATGGAGAGGCAGCTGCGTTCAGACGCAGGTTTTTCTGGAACACCCATACGACTTTTATGGCGCAGCAGAAGGAAAATGGGCAAAGATGAAGGAAAAGCAGTAACAAGGACCCAAGAGAATCTTACATCAAATGATCCAAAATTGGTACCAACTGCATCATAG 1983 0.4428 MHNYFPIYAMARTLTLPPISYTLAKTLKPISPFHKSIPFFSSILSRPKLTRRSLSRSVLRSTVGKLSGSVDDEEESEELDELDVIALEQEAKDAAQAYSNSLSQVLSIDEEKNDRKETAQSRRRSARRTKSIPDNLLQRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRLYGRSYWGEHEFMVVDTGGVITVSKSQATVMEELAITTTIGMDGIPLAVREAAVARMPSMIERQATAAVEESSVIIFLVDGQVSVDECVGKVPLVVIPYLYGGLTAADEEIADWLRKNYSDKYVILAVNKCESPRKRIMQASEFWSLGFEPLPISAISGTGTGELLDLVCSGLQKVEESNIIDEEEDYVPAISIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPDGQKFQLIDTAGIRKRAAIVSAGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYKIAERIEKEGKGCVIVVNKWDTIPNKKQQTALHYEEDVREKLRSLDWAPIVYSTAIAGHSVDKIIVAASEVEKERSRRLGTSILNQVVLEAVAFKPPPRTRGGKRGRVYYCTQAAIRPPTFVFFVNDAQLFPETYRRYMERQLRSDAGFSGTPIRLLWRSRRKMGKDEGKAVTRTQENLTSNDPKLVPTAS 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01360 660 MobiDBLite consensus disorder prediction 109 130 - -
Vian5g01360 660 FunFam GTPase Der 543 631 - -
Vian5g01360 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 348 IPR027417 -
Vian5g01360 660 NCBIfam ribosome biogenesis GTPase Der 231 627 IPR016484 GO:0005525
Vian5g01360 660 MobiDBLite consensus disorder prediction 634 660 - -
Vian5g01360 660 Gene3D - 547 631 IPR015946 -
Vian5g01360 660 PANTHER GTPASE DER 112 651 - -
Vian5g01360 660 CDD EngA2 367 540 - -
Vian5g01360 660 PRINTS GTP1/OBG GTP-binding protein family signature 441 459 IPR006073 GO:0005525
Vian5g01360 660 PRINTS GTP1/OBG GTP-binding protein family signature 367 387 IPR006073 GO:0005525
Vian5g01360 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 634 IPR027417 -
Vian5g01360 660 ProSiteProfiles EngA-type guanine nucleotide-binding (G) domain profile. 365 545 IPR031166 GO:0005525
Vian5g01360 660 CDD EngA1 141 348 - -
Vian5g01360 660 Hamap GTPase Der [der]. 137 631 IPR016484 GO:0005525
Vian5g01360 660 Gene3D - 361 545 IPR027417 -
Vian5g01360 660 FunFam GTPase Der 360 542 - -
Vian5g01360 660 Pfam 50S ribosome-binding GTPase 139 305 IPR006073 GO:0005525
Vian5g01360 660 Pfam 50S ribosome-binding GTPase 367 488 IPR006073 GO:0005525
Vian5g01360 660 NCBIfam small GTP-binding protein domain 365 533 IPR005225 GO:0005525
Vian5g01360 660 FunFam GTPase Der 135 355 - -
Vian5g01360 660 Gene3D - 140 354 IPR027417 -
Vian5g01360 660 Pfam KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 547 628 IPR032859 -
Vian5g01360 660 MobiDBLite consensus disorder prediction 643 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01360 Vian-Chr5 36199321 36206594 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01360 - - gmx:100777588 1076.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01360 5 36199321 36206594 Vian5g01360 5 36199321 36206594 ECH