Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01359 ATGTTGAGGGTGGCCGTGCGATGGAATCTGAAGCCAATGGTTTCTCTGCCACTAACTGCCTTTACATACCAACAGCAACAGTTCCACACTCTGAGCCCTAGGCCTCCATGTTGCACCTTCAGGCTTTTTTGTCGACCTTCTTCTTCCGCCGTTGCTCACACCTCGCTTCCTCTCTCCGCCGACTTGCACCGCTACCTCCGGTGCTCCTTACCGCAGAATTCGCCCCTCCGAGTCGCGGTTCTCGTTAGCGGAGGCGTTGATAGCAGCGTCGCTCTGCGGCTGCTCCACGCCGCCGGCCATTCCTGCACCGCTTTCTACCTCAAGATATGGTTCCAAGAAGATTTCGAGAACTTTTGGTCTGAGTGCCCCTGGGAAGAGGATTTGAAGTATGCCAAAGCTGTTTGTAGTCAGGTTGATGTACCCTTAGAAGTTGTTCATTTAACTGATGAATACTGGAACAATGTGGTTTCTTACCTCATTGAAGAGTATAGTAGTGGCCGAACTCCTAACCCCGACGTTCTTTGCAATACAAGAATAAAGTTTGGTGCATTCTTGGATGCTATTGGTGGCATGGGCTTCGATTATGTTGCCTCTGGGCATTATGCAAATGTTATCCACCCTTGTGCTGATGGCATGAATGAGCCTTCTGTTCTAGAACTATCACAAGACATGGTAAAGGATCAAACATACTTCCTTTCACACCTTTCACAATCCCAGCTGAAGCAACTTCTTTTTCCACTTGGTTGTATTCCCAAGGATGAAGTTCGCAGGCTTGCGACAAAATTTGATTTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGCAAGATAAGATTCAGTGAATTTGTTGCAAGACATATTGGGGAAAGAGAAGGTATCATACTGGAGGCTGAGACAGGGGATTTCCTTGGCAAACATCGAGGATTCTGGTTTTATACTATCGGTCAGCGTCAGGGTCTACGACTACCTGGAGGTCCATGGTATGTTGTCGAGAAGGATGTTAAAAACAATGTAGTTTTTGTCTCAAGAAATTACTTTTCCTTTGACAAAAGGAGGCGTGTATTCCGTGTTGGCTCTTTTAAATGGCTTAGTGAGGTGCCCCCAGGCCAGACAAGTCAGCTACAGTGCAAGGTGAGACATGGTCCAGGATTCTATGATTGTAGCTTACAAATGGAAGTGGAAGGAGATGGCCAAGGTCACTCTGCAGTTGTCCGCATATCTGAAGATGATCAAGGCCTAGCAGCTGGGCAGTTTGCGGCCTTTTATGAGGGAAGAAGATGCTTAGGTTCTGGTGTGATTTTGGAGTTTTGGGATGATCATAGTTTTCCAGTTTGTACAAAAGCTTTAGAAATTGCTAGAATGGAAGATAAATCAATGCTTGGGAATCCAGTAAAAATAAAAGTTAAACCAGATAGTCCGCAAGAAGTATGTGATTCTGCCGAGTTAGCAAGTAAAATATCATAA 1476 0.4539 MLRVAVRWNLKPMVSLPLTAFTYQQQQFHTLSPRPPCCTFRLFCRPSSSAVAHTSLPLSADLHRYLRCSLPQNSPLRVAVLVSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEEDLKYAKAVCSQVDVPLEVVHLTDEYWNNVVSYLIEEYSSGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYANVIHPCADGMNEPSVLELSQDMVKDQTYFLSHLSQSQLKQLLFPLGCIPKDEVRRLATKFDLPNKDRKDSQGICFLGKIRFSEFVARHIGEREGIILEAETGDFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRVFRVGSFKWLSEVPPGQTSQLQCKVRHGPGFYDCSLQMEVEGDGQGHSAVVRISEDDQGLAAGQFAAFYEGRRCLGSGVILEFWDDHSFPVCTKALEIARMEDKSMLGNPVKIKVKPDSPQEVCDSAELASKIS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01359 491 NCBIfam tRNA 2-thiouridine(34) synthase MnmA 77 437 IPR004506 GO:0008033|GO:0016740
Vian5g01359 491 Pfam Aminomethyltransferase beta-barrel domain 357 437 IPR046885 -
Vian5g01359 491 PANTHER - 62 480 - -
Vian5g01359 491 Pfam tRNA methyl transferase HUP domain 77 280 - -
Vian5g01359 491 FunFam tRNA-specific 2-thiouridylase MnmA 290 349 - -
Vian5g01359 491 Hamap tRNA-specific 2-thiouridylase MnmA [mnmA]. 76 438 IPR004506 GO:0008033|GO:0016740
Vian5g01359 491 Pfam tRNA methyl transferase PRC-barrel domain 285 347 IPR046884 -
Vian5g01359 491 Gene3D - 290 349 IPR023382 GO:0016783
Vian5g01359 491 CDD tRNA_Me_trans 77 437 IPR004506 GO:0008033|GO:0016740
Vian5g01359 491 Gene3D HUPs 63 289 IPR014729 -
Vian5g01359 491 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 77 322 - -
Vian5g01359 491 Gene3D Translation factors 356 445 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01359 K21027 - gmx:100785275 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01359 5 36191349 36194995 Vian5g01359 5 36191349 36194995 ECH