Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01348 ATGGCCAGTCGTTCCTTCTCGAAAGTTCGGAAAATCTGTGATTTTGGTTCTTTATTAGTGGGACAGCTTACGAGAGCTACTAAACTTATCGAACATGGTTCAGCTCCACTGCCCTTCGTTGAATCTACTTCATTCAAAACGGCGTCGTGTTGGAGGCAATACCACGACGGAAGGCCCAGAGGCCCCCTTTGGAGGGGAAAGAAGCTCATTGGCAAAGAAGCGCTCTTTGTGATACTGGGTTTGAAGAGGTTTAAGGATGACGAGGATAAACTTCACAAGTTCATCAAATCTCACGTTCTCAGACTCTTGAAGATGGATATGATCGCCGTTCTCACTGAACTTGAGCGTCAAGAACAAGTTTCTCTCGCTCTCAAGATGTTTAAGGTTATGCAAAAGCAAGATTGGTACAAGCCTGATACATTCCTTTATAAGGACTTAATCATCGCATTGGCAAGGTCCAAAAAAATGGACGAAGTGTCCCAATTGTGGGAAAGCATGCGAAAGGAAAATTTGTTCCCTGATTGTCAGACTTATACTGAAGTCATAAGGGGCTTCTTGAACTATGGATCTCCTGCGGATGCGATGAACATATATGAGGACATGAAGAATTCTCCGGATCCACCTGACGAGTTGCCATTCAGAATTTTATTGAAAGGACTCCTGCCACATCCTCTTTTGAGAAACAAAGTGAAACAAGATTTTGAGGAGATTTTTCCTGATTCAAATATCTATGATCCACCACAAGAGATATTTGGCGCTCGCTGA 765 0.4314 MASRSFSKVRKICDFGSLLVGQLTRATKLIEHGSAPLPFVESTSFKTASCWRQYHDGRPRGPLWRGKKLIGKEALFVILGLKRFKDDEDKLHKFIKSHVLRLLKMDMIAVLTELERQEQVSLALKMFKVMQKQDWYKPDTFLYKDLIIALARSKKMDEVSQLWESMRKENLFPDCQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPDELPFRILLKGLLPHPLLRNKVKQDFEEIFPDSNIYDPPQEIFGAR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01348 254 NCBIfam pentatricopeptide repeat 145 175 IPR002885 -
Vian5g01348 254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Vian5g01348 254 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 42 253 IPR044795 -
Vian5g01348 254 Gene3D Tetratricopeptide repeat domain 68 254 IPR011990 GO:0005515
Vian5g01348 254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Vian5g01348 254 Pfam PPR repeat family 138 185 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01348 Vian-Chr5 36085164 36086370 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01348 97 251 Miscellaneous Gene Families AT4G11690 24.516 1.23e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01348 - - gmx:100798492 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01348 5 36085164 36086370 Vian5g01348 5 36085164 36086370 ECH