Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01346 ATGATATTAGCAATGGATGCCAATTTCCAACATCAACCTTTACTACGTGAGTTACCAATTACGGATTCCACAACACAAAATTCCAAATTCATTGCAATTTTAATTATAATGACAAAAAAGTTGCTTTCCCCCATAAGCGAGGTGCTTTGCAGATGTCTCAAGAAACGACAAACCTTCCCTCTCTGCCAAGTTTTGACCATCCTCACGCAACCACCTTTGGACATTGTCAAAGAAAAAGCCATTAGTAATGCTGTAATGCAAACAAGCCTTCATGATCAAGGGTGGGGTGTGGTGCATAACATGTGCTTCCTGCACCTGCCTCAGTCTAAGTTTAAGAATAAGTGCCTATTGTCCCCCACCCGTAACTGCAAACTGGGCCTAGAAGTTGCTTCGTTTCTTCGAATGGACCCGCTCCCACCACAACCCTTCCCCGGCCGCCTCCTCGACGCCGTCGATTCGAAGTCCATCGCGTGCAACCAATTGTTGGTTTCTCTGAGAAAAGCAGATATGAGGGTGGAGTTTAAGCAAGTTTTTACAAAATTGAGGGAGAAGAAAGGATTTTCGTTTGATTCGTCGGGTTACAATGTGTGTATTCATGCATTTGGTTGTTGGGGTGATTTGGCTACTTGCTTCGCGCTCTTCAAGGAGATGAAGGACGATGGTAAGGGGTTGGTTGCCCCTGATTTGTGCACCTACAACAGTCTCATCACTGCGCTTTGCAGGCTTGGCAAGGTGGACGATGCGCTTGTTGTGTGGGAGGAGCTCAATGGCTCAGCTCACCAACCTGATCGCTTCACCTACACAAACCTAATTCATGCCTGTTGCAGAACTTTTAGAATGGGTGATGCCACAAGGGTTTTTAACCACATGCAGAGCCATGGGTTCCGTCCGGATACGCTTGTTTATAATTCTCTGCTGGATGGACATTTTAAGGCCACCAAGGTTGTTGAAGCCTGCCAGCTGTTTGAGAAAATGGTTCAAGAAGGGGTGAGACCTTCTTGCTGGACTTATAATATTCTCATTCATGGGCTGCTTAGGAATGGCAGGGCGGAAGCTGCTTATACTATGTTTTGTGACCTCAAGAAGAAGGGCCAATTTGTGGATGGGATTACCTACAGCATTGTTGTGTTGCAGCTTTGTAAGGAGGGTCAACTGGAGGAGGCGCTGCAGTTGGTGGAAGAAATGGAAAGCAGAGGTTTTACTGTTGACCTTGTCACCATAACATCCCTGCTGATTAGCATTCATAGGCACGGTCGCTGGGATTGGACGGACCGGCTTATGAAGCATATCAGAGAAGGTAATTTGGTACTTTCCGTTCTTAAGTGGAAAACTGGAATGGAGGCTTCTATGAAGAACCCTCCTGGAAAGAAAAAGGATTACTCACCTATGTTCCCTTCCAGAGGAGATTTTAGTGACATCATGAGCTTCATGACTGGTGCTCAGGATACCACCAACATTAATGATGGAGAGGAAACTTCCTTCGATGGGATTGACGAGTGGTCATCATCACCTCACATGGATAAATTGGCCAATCAAATGTGCTCTACTGGCTATTCTTCCCAGCTTTTTGCTCCTTCTCGCGGTCAAAGAGTCCAAGAAAAAGGACCGGATTCTTTTGATGTTGATATGGTGAATACTTTCTTGTCTATATTTTTGGCAAAGGGAAAGTTGAGCTTGGCTTGCAAATTGTTTGAGATTTTCAGTGATGCAGGTGTGAGTCCAGTGAGTTATTCTTATAATTCTATCATGAGTTCTTTTGTCAAAAAGGGTTATTTCACTGAGGCTTGGGCTGTTCTGGCTGAAATGGGAGAAAAATTTTGTCCTACTGATATAGCTACATACAATATGATACTTCAAGGTTTAGGAAAGATGGGACGAGCTGATCTAGCTAGTGCTGTTCTTGATAGGCTACTGAAGCAGGGAGGTTATCTTGACATAGTTATGTATAACACTCTCATCAATGCTCTGGGGAAGGCAGGCCGAATCAATGAGGTGAATAAGCTCTTTGAGCAAATGAGGAGCAGTGGAATAAATCCCGATGTTGTCACTTACAATACATTGATTGAAGTTCACAGCAAGGCAGGGCTATTGAAGGATGCTTATAAGTTCTTAAAAATGATGTTGGACGCTGGATGCACCCCTAACCATGTCACAGACACAACTTTAGATTATCTTGGGAGGGAAATTGATAAATTGAGATTCCAAAGGGCAACGATTTTGAGTGAAAAAGATGATCCTTCTTGA 2244 0.4407 MILAMDANFQHQPLLRELPITDSTTQNSKFIAILIIMTKKLLSPISEVLCRCLKKRQTFPLCQVLTILTQPPLDIVKEKAISNAVMQTSLHDQGWGVVHNMCFLHLPQSKFKNKCLLSPTRNCKLGLEVASFLRMDPLPPQPFPGRLLDAVDSKSIACNQLLVSLRKADMRVEFKQVFTKLREKKGFSFDSSGYNVCIHAFGCWGDLATCFALFKEMKDDGKGLVAPDLCTYNSLITALCRLGKVDDALVVWEELNGSAHQPDRFTYTNLIHACCRTFRMGDATRVFNHMQSHGFRPDTLVYNSLLDGHFKATKVVEACQLFEKMVQEGVRPSCWTYNILIHGLLRNGRAEAAYTMFCDLKKKGQFVDGITYSIVVLQLCKEGQLEEALQLVEEMESRGFTVDLVTITSLLISIHRHGRWDWTDRLMKHIREGNLVLSVLKWKTGMEASMKNPPGKKKDYSPMFPSRGDFSDIMSFMTGAQDTTNINDGEETSFDGIDEWSSSPHMDKLANQMCSTGYSSQLFAPSRGQRVQEKGPDSFDVDMVNTFLSIFLAKGKLSLACKLFEIFSDAGVSPVSYSYNSIMSSFVKKGYFTEAWAVLAEMGEKFCPTDIATYNMILQGLGKMGRADLASAVLDRLLKQGGYLDIVMYNTLINALGKAGRINEVNKLFEQMRSSGINPDVVTYNTLIEVHSKAGLLKDAYKFLKMMLDAGCTPNHVTDTTLDYLGREIDKLRFQRATILSEKDDPS 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01346 747 Pfam PPR repeat 194 221 IPR002885 -
Vian5g01346 747 Pfam PPR repeat family 645 688 IPR002885 -
Vian5g01346 747 Pfam PPR repeat family 297 345 IPR002885 -
Vian5g01346 747 Pfam PPR repeat family 227 276 IPR002885 -
Vian5g01346 747 Pfam PPR repeat family 576 622 IPR002885 -
Vian5g01346 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 645 679 IPR002885 -
Vian5g01346 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Vian5g01346 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 610 644 IPR002885 -
Vian5g01346 747 Gene3D Tetratricopeptide repeat domain 149 280 IPR011990 GO:0005515
Vian5g01346 747 NCBIfam pentatricopeptide repeat 336 364 IPR002885 -
Vian5g01346 747 NCBIfam pentatricopeptide repeat 265 299 IPR002885 -
Vian5g01346 747 NCBIfam pentatricopeptide repeat 370 403 IPR002885 -
Vian5g01346 747 NCBIfam pentatricopeptide repeat 647 681 IPR002885 -
Vian5g01346 747 NCBIfam pentatricopeptide repeat 194 221 IPR002885 -
Vian5g01346 747 NCBIfam pentatricopeptide repeat 301 334 IPR002885 -
Vian5g01346 747 NCBIfam pentatricopeptide repeat 682 715 IPR002885 -
Vian5g01346 747 NCBIfam pentatricopeptide repeat 230 255 IPR002885 -
Vian5g01346 747 NCBIfam pentatricopeptide repeat 577 608 IPR002885 -
Vian5g01346 747 NCBIfam pentatricopeptide repeat 613 645 IPR002885 -
Vian5g01346 747 Gene3D Tetratricopeptide repeat domain 607 728 IPR011990 GO:0005515
Vian5g01346 747 Gene3D Tetratricopeptide repeat domain 281 461 IPR011990 GO:0005515
Vian5g01346 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Vian5g01346 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Vian5g01346 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Vian5g01346 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 680 714 IPR002885 -
Vian5g01346 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Vian5g01346 747 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 156 450 - -
Vian5g01346 747 Pfam PPR repeat 364 396 IPR002885 -
Vian5g01346 747 Gene3D Tetratricopeptide repeat domain 497 605 IPR011990 GO:0005515
Vian5g01346 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 609 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01346 540 730 Glycosyltransferase AT1G05670 32.812 6.31e-22 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01346 - - gmx:100788992 1110.9