Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01341 ATGGGTGAGACAAACAGTAGAAGCAAAAGCAGCAAGTGGAGTTTGGAGGGAATGACAGCACTGGTCACAGGTGGATCCAAAGGAATAGGAGAAGAGCTGATAGCTAGAGTCTCCTCTCAGTTCAATGGAAAACTCAATATCCTTGTAAACAATGTGGGAACAAACATACAGAAGCAGACCCTGGATTTTACAGCGGAAGATTTCGCATTTCTGATGAATACGAATCTTGAATCTTGTTTCCACTTAAGCCAGCTTGCACATCCTCTCCTAAAAGCTTCAGAAGCTGCAAGTATCATTTTCATATCCTCCGTTGCTGGTGTTGTAGCTACAAACTTAGCATCCATTGTATATAGTGCATCTAAAGGAGCAATGAACCAAATGACAAAAAATCTAGCATGTGAATGGGCAAATGACAACATAAGGAGTAATTGTATTGCACCTGGGGTAATCAGAACCCCTCTGGCGGAAAAGAACTTGAAAGAGGAAACAATTATGAATGCTGTAATTCCTCAAATCCCTCTGGGACGGATTGGAGAGGCAGAGGAAGTGTCTTCGTTGGTGTCATTTCTGTGCTTGCCTGCAGCCTCTTACATCACAGGCCAGATCATTTGTATTGATGGCGGCTTCTCTGTGAACGGCCTCCATTTATTCTAG 654 0.4312 MGETNSRSKSSKWSLEGMTALVTGGSKGIGEELIARVSSQFNGKLNILVNNVGTNIQKQTLDFTAEDFAFLMNTNLESCFHLSQLAHPLLKASEAASIIFISSVAGVVATNLASIVYSASKGAMNQMTKNLACEWANDNIRSNCIAPGVIRTPLAEKNLKEETIMNAVIPQIPLGRIGEAEEVSSLVSFLCLPAASYITGQIICIDGGFSVNGLHLF 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01341 217 PANTHER TROPINONE REDUCTASE 31 213 IPR045000 GO:0016491
Vian5g01341 217 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 43 54 IPR002347 -
Vian5g01341 217 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 104 IPR002347 -
Vian5g01341 217 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 117 136 IPR002347 -
Vian5g01341 217 Pfam Enoyl-(Acyl carrier protein) reductase 31 210 - -
Vian5g01341 217 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 104 132 IPR020904 GO:0016491
Vian5g01341 217 Gene3D - 31 216 - -
Vian5g01341 217 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Vian5g01341 217 PRINTS Glucose/ribitol dehydrogenase family signature 90 106 IPR002347 -
Vian5g01341 217 PRINTS Glucose/ribitol dehydrogenase family signature 138 155 IPR002347 -
Vian5g01341 217 PRINTS Glucose/ribitol dehydrogenase family signature 117 136 IPR002347 -
Vian5g01341 217 PRINTS Glucose/ribitol dehydrogenase family signature 173 193 IPR002347 -
Vian5g01341 217 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 211 IPR036291 -
Vian5g01341 217 FunFam Short-chain dehydrogenase reductase 31 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01341 Vian-Chr5 36048584 36049973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01341 5 214 Miscellaneous Gene Families AT2G29150 52.874 7.59e-87 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01341 K08081 - gmx:100785449 302.367