Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01339 ATGGGCGAGAGAAACAGTGGAAGCAAAAGTAGCAGGTGGTGTTTGCAGGGAATGACAGCACTGGTCACAGGTGGATCCAAAGGAATCGGATATTCTATCGTGGAGCAGTTGGCAGAGCTTGGGGCCACTGTACACACTTGTTCTCGGAACCAAGCTGAACTCAATGAATCTTTGAACGAATGGACCACAAAAGGATACAGAGTAACCGGTTCGGTCTGTGACATCACCTCTCGTGTTAACAGAGAAGAGCTCATAGCTAGAGTCTCCTCTCAGTTCAATGGGAAACTCAATATCCTTGTAAACAATGTGGGAACAAACTTACAGAAGCAGACCCTGGATTTTACAGCGGAAGATTTCGCATTTCTGATGAATACGAATCTTGAATCTTGTTTCCACTTAAGTCAGCTTGCACATCCTCTCCTAAAAGCTTCAGAAGCTGCAAGTATCGTTTTCATATCCTCCGCTGCTGGTGTTATAGCTTCAAACATAGCATCCGTTGTATACAGTGCAGCAAAAGGAGCTATACACCAAATGACAAAAAATCTAGCATGTGAATGGGCCAAAGACAACATAAGGAGTAATTGTATTGCACCTGGGGTAATCAGAACCCCTCTGGCGGAAAAGCACTTTAAAGAGGAAACAATTAGGAATGCTGTAATTTCTCAAACCCCTCTGGGACGTATTGGAGAGGCAGAGGAAGTGTCTTCGTTGGTGGCATTTCTGTGCTTGCCTGCAGCCTCTTACATCACAGGACAGACCATTTGTGCTGATGGCGGCTTCTCTGTGAACGGCCTCTACATATTCTAG 807 0.4523 MGERNSGSKSSRWCLQGMTALVTGGSKGIGYSIVEQLAELGATVHTCSRNQAELNESLNEWTTKGYRVTGSVCDITSRVNREELIARVSSQFNGKLNILVNNVGTNLQKQTLDFTAEDFAFLMNTNLESCFHLSQLAHPLLKASEAASIVFISSAAGVIASNIASVVYSAAKGAIHQMTKNLACEWAKDNIRSNCIAPGVIRTPLAEKHFKEETIRNAVISQTPLGRIGEAEEVSSLVAFLCLPAASYITGQTICADGGFSVNGLYIF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01339 268 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 262 IPR036291 -
Vian5g01339 268 Pfam Enoyl-(Acyl carrier protein) reductase 26 261 - -
Vian5g01339 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Vian5g01339 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 105 IPR002347 -
Vian5g01339 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Vian5g01339 268 FunFam Short-chain dehydrogenase reductase 6 264 - -
Vian5g01339 268 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Vian5g01339 268 PRINTS Glucose/ribitol dehydrogenase family signature 94 105 IPR002347 -
Vian5g01339 268 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Vian5g01339 268 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Vian5g01339 268 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Vian5g01339 268 PRINTS Glucose/ribitol dehydrogenase family signature 224 244 IPR002347 -
Vian5g01339 268 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Vian5g01339 268 PANTHER TROPINONE REDUCTASE 12 264 IPR045000 GO:0016491
Vian5g01339 268 Gene3D - 5 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01339 Vian-Chr5 36039138 36040554 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01339 11 265 Miscellaneous Gene Families AT2G29150 62.745 4.34e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01339 K08081 - gmx:100785449 444.506