Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01335 ATGTCGGGAGGTTTCTTTCGAGGCACATCCGCGGACCAGGACACTCGGTTTTCGAACAAGCAAGCCAAGCTGATGAAATCACAGAAGTTTGCACCGGAATTGGAGCATCTGGTGGACATGACGAAGGTGAATATGGAAGTAATTAAGCCTTGGGTCACCAGAAGGGTGACCGAGTTTCTTGGTTTCGAGGATGAAGTGCTTATTAACTTCATACACAGTCTTCTGGATGCTAAGGAAGTGAACGGGAAGGAAGTTCAAATACAAATTACTGGATTTATGGAAAAGAACACTGGAAAGTTCATGAAAGAACTTTGGACACTTCTTCTCAGTGCACAGAAAAATGCCAGTGGTGTTCCTCAGCAGTTCTTGGATGCCAAGGAAGAAGAACTTTTGAAGAAGAAGGCTGAAAATGATCGGATAACCAGTGAAATTCAGAGGAAAAAGGATAAGGAAGGTAGAGATATTTTGGAAGAGAGGTTTAAGAAACTGGACGGTGGATTTGATTCCAAGGATAAGGATACTGCATCAGCTCCAAATTCAAAGTCGAAGGATTCAGGATATGATCGAGATGGGAAGGAACCTGAAAAGAGGAATGGTGTCAGGGCAAGGAGCAGACTTTCTAGGTCCCCACATTCACCTGCAGTTTCTACTTCACCTCATCGAGGCTCACCCTCAAGGTCAATGAGCAAATCATTTTCAAATTCCCGAAGTTATTCAGGTGGTAGACACAGGTCAAAAAGTATGTCTAGGTCTCCAACAGCTCGAGGACGCTCTCCTTCTTTTGAAAAGATTCACCGTTCTCCACAAAGACGATCTATTTCTCCTCATCGGCATTCACCACGACGTTTTCCTCATAGGAGGTCACTTTATTTGAGGAGAAGATCCGGATCTCGCTCAAGCTACAAATCTCCTTCTCCTATACGACGTAGAATTCATTCACCAGTGCACCGAAGTTCACCTTCTTATCGACGTCGGAGGTCACCTTCACTGGTGCGACGACGAAGGTCACCTTCACCGGTGCGACGACGGAGATCACCTTCTCCAGTGCGACGACGTTGGTCACCTTCTCCAATGCGACGACGCAGGTCTCCTTCTCCTGGGAGAAGACATAGATCTCCTTTGGTACGACGACGTAGATCTCCATCTCCTGATCGTCATCATAGATCACCGTCTCTTGGTCGTCGTCATAGATCACCATCCCCAGGGCACAAACATAGATCCCCATCACCTCTTGGAATGTGGAGATCACCCGGTCACAGACATAGATCACCATCACCTCTTGGACCAAGAAGATCACCTTCACCTAGACGACGAAGATCACCTGTCACTCGGCATAGATCACCTTCTCCAGTCCGTCGAGTTCCACCAATCAGTGCTCGGAATAGATCAGAATCTCCCATGCAATCCCCCTCCCCAATACAACGAAGGTATGGTAGTAGAACTCCTCCACACTCACCATCCCCATTGCGACGCAGATCACCTATTCCTAGCAAGAATAGATCTCCAAGTATCTCCCCTCAGAGGTCTCCTCGAGATGAATGGAGTTCTCAGTCTCCAATACGACATGTTTCAACCTCTCCAAATAGGAAAAGTTCTCAAAGACAACAAAGAAGTCCCATGCAGTCTTCTATAAGGAGAGTCAGGAGTAGCCCTGTGGGGTCTGTACGAAGAGGCAAAGCTTTGAACTATAAATCACAAGAGTCAATGTCCACTCCGGAGAAATCTCCAAATCGATCTGTATCTGCAGAAGCAAGGAGTGAGACCAGCAGTGAAGGTAGAAGAGAAAGGAGAGATCCTAAAGTAAACTCATCACACAAGATAGTAAGACACTCACCAGCTAGTACGAGAAAAGGTTCACCTGCAAAATATGGTCATGAGGATGAGTTCTCTCCTGAGAGGGATGCAGGTCATCCAGCTTCTGAACATAACAATGATTGGAGTAAGAAAGACCAGGAAATAAAACGGGATAAGTCTGCTGGAAAAGGCAATGAATTTCTTTCTCAACAAAAGCCCTCAGTTAACAAGGAAACTTTTTCGAGGGAGAAGCCTCGTGAATCTGTAGATATTAAAAAATCAGATGACAAGGACCAATCCCGTTCAAATTATGCCAAAAGTAGTGATCGGCACCAGAAATCAGAAGCCACTCCATATTTAGTTGGAAGAGATGATATTGGCAATCAGAGTGCTTCACATGATTCTGTTTCTGAGGAAAGTGGTAAGCATAGACGAGAGGGCAAGAACAGGAAAAGGCATAAAAGGTCTGAGAAAAAATATGCGTCTTCTGACGAGGATTATAGTTATGATTCTGAGATAGAGGACAGGAAAGAGGCTAAGAAGAGGAGAAAGGAGGAGAAGAAGTTGCGGAAGGAGGATAAGCGTAGAAGACGGGAAGAGAGGCGTCGCAGAAGGGAAGAACGACGTGCAGAGAAGCTGAAGCTGAAAAGTAAAACAGACAATATTTCAGATGACGAGGAAGCTGGACGAGATTATCATCAAAGTGATGGTGAAGAGACACCATCTGAGCAAAAGAAGCTTGAGATTGAATTGCGGAATAAGGCTCTTGAATCCCTCAAAGCAAAGAGGGGCATCAATAATTAA 2598 0.4534 MSGGFFRGTSADQDTRFSNKQAKLMKSQKFAPELEHLVDMTKVNMEVIKPWVTRRVTEFLGFEDEVLINFIHSLLDAKEVNGKEVQIQITGFMEKNTGKFMKELWTLLLSAQKNASGVPQQFLDAKEEELLKKKAENDRITSEIQRKKDKEGRDILEERFKKLDGGFDSKDKDTASAPNSKSKDSGYDRDGKEPEKRNGVRARSRLSRSPHSPAVSTSPHRGSPSRSMSKSFSNSRSYSGGRHRSKSMSRSPTARGRSPSFEKIHRSPQRRSISPHRHSPRRFPHRRSLYLRRRSGSRSSYKSPSPIRRRIHSPVHRSSPSYRRRRSPSLVRRRRSPSPVRRRRSPSPVRRRWSPSPMRRRRSPSPGRRHRSPLVRRRRSPSPDRHHRSPSLGRRHRSPSPGHKHRSPSPLGMWRSPGHRHRSPSPLGPRRSPSPRRRRSPVTRHRSPSPVRRVPPISARNRSESPMQSPSPIQRRYGSRTPPHSPSPLRRRSPIPSKNRSPSISPQRSPRDEWSSQSPIRHVSTSPNRKSSQRQQRSPMQSSIRRVRSSPVGSVRRGKALNYKSQESMSTPEKSPNRSVSAEARSETSSEGRRERRDPKVNSSHKIVRHSPASTRKGSPAKYGHEDEFSPERDAGHPASEHNNDWSKKDQEIKRDKSAGKGNEFLSQQKPSVNKETFSREKPRESVDIKKSDDKDQSRSNYAKSSDRHQKSEATPYLVGRDDIGNQSASHDSVSEESGKHRREGKNRKRHKRSEKKYASSDEDYSYDSEIEDRKEAKKRRKEEKKLRKEDKRRRREERRRRREERRAEKLKLKSKTDNISDDEEAGRDYHQSDGEETPSEQKKLEIELRNKALESLKAKRGINN 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01335 865 SMART pwi_2 40 114 IPR002483 GO:0006397
Vian5g01335 865 MobiDBLite consensus disorder prediction 587 605 - -
Vian5g01335 865 MobiDBLite consensus disorder prediction 309 403 - -
Vian5g01335 865 MobiDBLite consensus disorder prediction 785 801 - -
Vian5g01335 865 MobiDBLite consensus disorder prediction 620 661 - -
Vian5g01335 865 MobiDBLite consensus disorder prediction 461 481 - -
Vian5g01335 865 MobiDBLite consensus disorder prediction 802 846 - -
Vian5g01335 865 SUPERFAMILY PWI domain 25 132 IPR036483 GO:0006397
Vian5g01335 865 MobiDBLite consensus disorder prediction 756 784 - -
Vian5g01335 865 MobiDBLite consensus disorder prediction 164 846 - -
Vian5g01335 865 Gene3D PWI domain 33 125 - -
Vian5g01335 865 MobiDBLite consensus disorder prediction 561 586 - -
Vian5g01335 865 MobiDBLite consensus disorder prediction 164 202 - -
Vian5g01335 865 MobiDBLite consensus disorder prediction 432 446 - -
Vian5g01335 865 Coils Coil 123 150 - -
Vian5g01335 865 Pfam PWI domain 46 115 IPR002483 GO:0006397
Vian5g01335 865 MobiDBLite consensus disorder prediction 492 549 - -
Vian5g01335 865 MobiDBLite consensus disorder prediction 675 716 - -
Vian5g01335 865 Coils Coil 767 814 - -
Vian5g01335 865 MobiDBLite consensus disorder prediction 209 256 - -
Vian5g01335 865 PANTHER SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN 460 861 - -
Vian5g01335 865 MobiDBLite consensus disorder prediction 270 293 - -
Vian5g01335 865 ProSiteProfiles PWI domain profile. 27 125 IPR002483 GO:0006397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01335 K13171 - gmx:100810238 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01335 5 36011465 36017540 Vian5g01335 5 36011465 36017540 ECH