Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01334 ATGGCGTCAACTACTCTCTCCAACTTCTGGCTCTCTCAGTTCAACCCACTGCACAATCAACGGAAAAAGAGGCCAAAATCTCTACTCTCATCTTCTCGAACCAATCCACGCCTTGTTTCTTCCATTAACGATCATTTGGCGCTCACACGTGTCACATATCCGCTTCTCCAGTCTCATTCTACTCCCAAGCGCAGATTCCACGTTGGAGTGCAGAAAGATTATTCTGATGGGGAAAGCTCTGAGTCGCTTGTTTCTGACGCAACATACCAAGAGGAATTTTCTTGGTCTTCTATCATTCTTCCGTTTCTGTTCCCTGCATTGGGTGGCTTATTATTTGGTTATGATATTGGTGCCACCTCCGGTGCTACAATCTCACTGCAGTCACCTGACCTTAGCGGAATAACATGGTTCAATCTTTCTGCCATTCAGCTTGGACTGGTGGTTAGTGGTTCCCTATATGGGGCTCTTCTGGGCTCACTTCTCGCATATGCTATAGCCGATTTCCTTGGGAGGAAGCGACAACTCATTGCTGCAGCACTGTTGTATATAGTTGGTGGTGTGGTTACTGCATATTCACCAGAACTTGGTGTTCTCTTAGCAGGAAGGCTGCTTTATGGACTCGGTATAGGTTTGGCCATGCATGGGGCTCCTTTGTATATTGCAGAGACATGTCCATCACAAATCCGTGGTACCCTAGTATCATTAAAAGAACTCTTCATTGTCCTGGGGATTCTGTTGGGTTATTTTGTGGGAAGCTTTCTGATTGATACAGTTGGGGGATGGCGGTTCATGTATGGATTTAGTGCTCCAGTTGCTGTATTAATGGGGCTTGGAATGTGGACTCTCCCCGCTTCTCCTCGTTGGCTGCTTCTCAGAGCAGTGCAAGGAAAAGGTTCTTTTCAAGATTTGAAGGAAAAGGCCATTGTTTCCCTGAGCAAACTAAGGGGTCGACCGCCTGGTGACAGAGAATCTGAGAGACAAATAGAAGATACCCTTCTCTCGTTGAAGTCTGCCTATGGACAACAGGAATCAGAGGGGAATTTCTTAGAGGTGTTTCAGGGTCCCAATCTGAAAGCTTTCATAATTGGTGGAGGACTGGTATTATTTCAACAGATAACAGGTCAACCGAGTGTTCTATATTATGCAGGCCCAATTCTTCAGAGCGCTGGATTTTCTGCTGCATCTGATGCTACAAAAGTTTCAGTTGTTATTGGCTTATTCAAGTTACTAATGACCTGGATTGCTGTCCTAAAAGTTGATGATTTGGGGAGAAGGCCTCTGCTGATTGGAGGTGTCAGTGGCATTGCCCTCTCTTTAGTTCTCCTTTCTGCTTATTATAAATTTCTTGGAGGGTTCCCACTTGTTGCTGTTGGAGCTTTACTTCTTTATGTTGGTTGCTACCAGATATCATTTGGGCCCATAAGTTGGTTAATGGTATCAGAGATCTTCCCACTTCGCACAAGAGGAAAGGGGATTAGTCTGGCTGTTCTTACGAACTTTGCTTCAAATGCTGTAGTCACTTTTGCATTCTCTCCATTAAAGGAGTTTCTAGGAGCAGAAAACCTTTTTCTCCTTTTTGGGGCTATTGCTATTCTATCACTTCTGTTCGTTATCTTTTCTGTGCCGGAGACAAAAGGGTTGAGTTTAGAAGATATAGAATCCAAAATCTTGAAATGA 1677 0.4436 MASTTLSNFWLSQFNPLHNQRKKRPKSLLSSSRTNPRLVSSINDHLALTRVTYPLLQSHSTPKRRFHVGVQKDYSDGESSESLVSDATYQEEFSWSSIILPFLFPALGGLLFGYDIGATSGATISLQSPDLSGITWFNLSAIQLGLVVSGSLYGALLGSLLAYAIADFLGRKRQLIAAALLYIVGGVVTAYSPELGVLLAGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLVSLKELFIVLGILLGYFVGSFLIDTVGGWRFMYGFSAPVAVLMGLGMWTLPASPRWLLLRAVQGKGSFQDLKEKAIVSLSKLRGRPPGDRESERQIEDTLLSLKSAYGQQESEGNFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAASDATKVSVVIGLFKLLMTWIAVLKVDDLGRRPLLIGGVSGIALSLVLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLRTRGKGISLAVLTNFASNAVVTFAFSPLKEFLGAENLFLLFGAIAILSLLFVIFSVPETKGLSLEDIESKILK 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01334 558 Pfam Sugar (and other) transporter 104 553 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vian5g01334 558 ProSitePatterns Sugar transport proteins signature 2. 204 229 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian5g01334 558 FunFam D-xylose-proton symporter-like 3, chloroplastic 94 556 - -
Vian5g01334 558 SUPERFAMILY MFS general substrate transporter 102 553 IPR036259 -
Vian5g01334 558 CDD MFS_GLUT10_12_Class3_like 104 552 - -
Vian5g01334 558 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 2 96 556 - -
Vian5g01334 558 Gene3D MFS general substrate transporter like domains 93 556 IPR036259 -
Vian5g01334 558 PRINTS Sugar transporter signature 480 492 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian5g01334 558 PRINTS Sugar transporter signature 199 218 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian5g01334 558 PRINTS Sugar transporter signature 370 380 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian5g01334 558 PRINTS Sugar transporter signature 457 478 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian5g01334 558 PRINTS Sugar transporter signature 109 119 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian5g01334 558 NCBIfam sugar porter family MFS transporter 98 552 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian5g01334 558 ProSiteProfiles Major facilitator superfamily (MFS) profile. 101 545 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01334 Vian-Chr5 36003728 36007099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01334 2 558 Organic Solute Cotransporters AT5G59250 72.469 0.0 789
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01334 - - gmx:100809316 967.992