Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01330 ATGTTGTCTGAATTGGAAAGAAGACCGATGCTGGGTAGTAACGAGGGTTCGTTTGGAGATGACCTGGAGAAGGAGATAGGGATGTTGCTTCGTGAGCAACGCCGACAAGAGGCTGATGATCGTGAGAGAGAGCTTAATATATTTAGGAGTGGATCAGCGCCTCCAACCGTGGAGGGTTCTTTAAGTGCTGTGGGAGGGTTGTTTGGTGGTGCTGGTGTTGCCGGTGCTGCTGGTGGTGCTGGTGCCTTTTCGGAGTTTCATGGGGCCAAGGATGTGAATGGGATTGCTTCCGAGGAAGAACTAAGGTCTGATCCAGCTTATCTTACATACTATTACTCCAATGTGAATTTGAATCCTAGGTTGCCACCTCCTTTGCTGTCAAAGGAGGATTGGAGGTTTCAACAAAGACTTAAAGGTGGTTCGTCAGTTGTGGGTGGAATCGGAGATAGGAGGAAAGTGAACAGGGCTGACGATACTGGTGGTAGATCCTTCTTTTCTACACCCCCGGGTTTTAACATGAGGAAACAAGAGAGTGAAGTGGATAATGAAAAAACAAGAGGCACTGCAGAGTGGGGTGGTGGTGGACTCATTGGTTTGCCTGGAATAGGGCTGAGCAAACAAAAGAGTTTTGCAGAAATTTTCCAGGATGATTTGGTACGTAATACCTCTGTTACGGGCCCTCCTTCTCGTCCAGCCAGTCGTAATGCATTTGATGACAATGATATCATTAGTTCTGCTGAAGCGGAGTTGCCTCACGTACGCCGGGAGTCTACGACCACAGATGCACCAAGGCCAGGAACGAATGTTCAAGGATCATCTGCTTCCCAAAATACTGGTCTGCCAGCTTCATATTCTTATGCTGCTGCAGTGGGGTCTTCCTTATCGAGAAGCACTACTCCTGATCCACAGCACGTTGCTAGGGCTCCCAGTCCCTGCATCACACCTATTGGTGGTGGCAGAGCCAATGCTTCTGACAAGAGAGGTGTTTCCAGTCCAGATGGATTTGATGGTGTTTCATCTGGAATCAATGGGTCATCAGATCTTATGGCAGCATTGTCAGCGATGAATTTGTCAGCAGATGAAATGTTAGATGGTGATAATCATTTGCCATCACAGGTTGAATCAGATGTTGATAATCACCGGAGATATCTTTTTGGTAGGCAAGGAGGTCAAGATCATGGGAAGCAACATGCTTATTTAAAGAAATCTGAATCAGCTCACTTTCAAAATTCAAGTAAAAGCAGGAGCGTATCTGATCCTAATCCTAACAATGCATCCTTGGACAGGCAGGTTGAGCTACAAAAGTCTAATGTTCCTTCCAATAACTCATATTTCAAAGGATCACCTACCTCCCATTTTAGTAGAGGAGGTAGTTTGCCTCCTCAGTACCAGCCTTTAGATGGTACAAATTCGTCATTTAGTAACTACGGTATGAGTGGATATGCTGGAAATCCAGCATTGGCATCCTTGATGACTAATCAACTGGGCACTGGTAATCTGCCTCCATTGTTTGAAACGGTTGCTGCAGCATCGGCAATGGCAGTCCCCGGAATGGACACGAGAATTCTTGGAAGTGGTTTGGCTTCTGGAGCTACTGCTCCATCTGATGTGCACAATCTTGGTAGGATGGGAAATCAAATTCCAGGCACTGCTCTCCAGGCCCCTTTTGTTGATCCCATGTATTATCAGTACCTGAGAACATCTGAGTATGCAGCACAACTTGGTGCTCTTAGTGACCCCTCTGTCGACAGGACCTACTTAGGTAATTCATACATGAACTTACTTGAGCTTCAGAAAGCTTATCTTGGGTCTATTCTCTCACCTCAGAAATCTCAATACAATGTACCACTGGGTGGTAAATCAGGAAGCTCCACTCCTCATGGTTATTATGGAAATCCTGCATATGGTGTTGGGTTGTCTTATCCAGGAAGTCCAATGGCAAACTCTGTTGTGTCGACTTCTCCAGTAGGACCTGGAAGTCCTGTTAGGCACAATGAACTGAATATGCGTTTTGCTTCTGGAATGAGGAATTTAGCTGGGGTAATGGGACCTTGGCATGTAGATACTGGGAACATTGATGAAAGTTTTGCTTCTTCTCTGTTGGAGGAGTTTAAAAGCAACAAAACAAAGTGTTTTGAGCTTTCTGAAATTGCTGGTCACGTTGTTGAATTCAGTGCTGATCAATATGGGAGCCGATTTATTCAACAAAAGCTTGAAACAGCTACTACTGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCAGCCCAGAGAAGAGAATTGGCCAACAAACTTCTTGGCCATGTTCTGACACTGAGCCTTCAAATGTATGGTTGCCGAGTCATCCAGAAGGCCATCGAAGTTGTTGATCTGGACCAGAAGATAGAGATGGTGCAAGAGCTTGATGGTAATGTCATGCGCTGTGTACGTGATCAGAATGGTAACCATGTCATTCAGAAGTGTATTGAATGCGTCCCTGAAGATGCAATCCATTTTATTGTCTCAACTTTCTTTGATCAAGTCGTTACGCTCTCAACCCATCCATATGGTTGCCGTGTGATACAGAGAGTACTGGAGCACTGCAAAGATCCTACAACACAGCAGAAAGTTATGGATGAAATTTTAGGGGCAGTTAGTATGTTAGCTCAGGACCAGTATGGCAACTACGTTGTTCAGCATGTTCTGGAGCATGGGAAGCCTCATGAGCGCTCTTCTATAATAAAGGAATTAGCAGGCAAGATTGTTCAGATGAGTCAACAGAAGTTTGCGTCCAATGTTGTGGAGAAATGTTTGACCTTTGGAGGTCCTTCTGAGCGCCAATTACTAGTACATGAGATGCTTGGCTCCACAGATGAAAATGAGCCTCTTCAGGCCATGATGAAAGATCAGTTTGCAAATTACGTTGTACAAAAGGTGCTGGAAACGTGTGATGATCAGCAGCGCGAACTGATTCTTTCACGAATTAAGGTTCATTTAAATGCATTGAAGAAGTACACCTATGGGAAGCACATCGTTGCACGTGTAGAGAAACTTGTTGCTGCTGGAGAAAGGAGAATTGCAGCTCAGTCTCCCCAACCTGTTTAG 3156 0.4484 MLSELERRPMLGSNEGSFGDDLEKEIGMLLREQRRQEADDRERELNIFRSGSAPPTVEGSLSAVGGLFGGAGVAGAAGGAGAFSEFHGAKDVNGIASEEELRSDPAYLTYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGSSVVGGIGDRRKVNRADDTGGRSFFSTPPGFNMRKQESEVDNEKTRGTAEWGGGGLIGLPGIGLSKQKSFAEIFQDDLVRNTSVTGPPSRPASRNAFDDNDIISSAEAELPHVRRESTTTDAPRPGTNVQGSSASQNTGLPASYSYAAAVGSSLSRSTTPDPQHVARAPSPCITPIGGGRANASDKRGVSSPDGFDGVSSGINGSSDLMAALSAMNLSADEMLDGDNHLPSQVESDVDNHRRYLFGRQGGQDHGKQHAYLKKSESAHFQNSSKSRSVSDPNPNNASLDRQVELQKSNVPSNNSYFKGSPTSHFSRGGSLPPQYQPLDGTNSSFSNYGMSGYAGNPALASLMTNQLGTGNLPPLFETVAAASAMAVPGMDTRILGSGLASGATAPSDVHNLGRMGNQIPGTALQAPFVDPMYYQYLRTSEYAAQLGALSDPSVDRTYLGNSYMNLLELQKAYLGSILSPQKSQYNVPLGGKSGSSTPHGYYGNPAYGVGLSYPGSPMANSVVSTSPVGPGSPVRHNELNMRFASGMRNLAGVMGPWHVDTGNIDESFASSLLEEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLAAQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVHEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPQPV 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01330 1051 FunFam Pumilio homolog 1 isoform 2 695 1042 - -
Vian5g01330 1051 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 696 1036 IPR033133 GO:0003723
Vian5g01330 1051 MobiDBLite consensus disorder prediction 438 471 - -
Vian5g01330 1051 Pfam Pumilio-family RNA binding repeat 756 789 IPR001313 GO:0003723
Vian5g01330 1051 Pfam Pumilio-family RNA binding repeat 792 825 IPR001313 GO:0003723
Vian5g01330 1051 Pfam Pumilio-family RNA binding repeat 835 858 IPR001313 GO:0003723
Vian5g01330 1051 Pfam Pumilio-family RNA binding repeat 983 1012 IPR001313 GO:0003723
Vian5g01330 1051 Pfam Pumilio-family RNA binding repeat 903 934 IPR001313 GO:0003723
Vian5g01330 1051 Pfam Pumilio-family RNA binding repeat 720 754 IPR001313 GO:0003723
Vian5g01330 1051 Pfam Pumilio-family RNA binding repeat 938 971 IPR001313 GO:0003723
Vian5g01330 1051 Pfam Pumilio-family RNA binding repeat 864 899 IPR001313 GO:0003723
Vian5g01330 1051 ProSiteProfiles Pumilio RNA-binding repeat profile. 752 787 IPR001313 GO:0003723
Vian5g01330 1051 MobiDBLite consensus disorder prediction 403 426 - -
Vian5g01330 1051 MobiDBLite consensus disorder prediction 385 402 - -
Vian5g01330 1051 ProSiteProfiles Pumilio RNA-binding repeat profile. 860 896 IPR001313 GO:0003723
Vian5g01330 1051 SUPERFAMILY ARM repeat 699 1033 IPR016024 -
Vian5g01330 1051 MobiDBLite consensus disorder prediction 1 24 - -
Vian5g01330 1051 MobiDBLite consensus disorder prediction 221 280 - -
Vian5g01330 1051 MobiDBLite consensus disorder prediction 144 192 - -
Vian5g01330 1051 ProSiteProfiles Pumilio RNA-binding repeat profile. 788 823 IPR001313 GO:0003723
Vian5g01330 1051 CDD Pumilio 712 1032 IPR033712 GO:0003723
Vian5g01330 1051 ProSiteProfiles Pumilio RNA-binding repeat profile. 933 968 IPR001313 GO:0003723
Vian5g01330 1051 ProSiteProfiles Pumilio RNA-binding repeat profile. 824 859 IPR001313 GO:0003723
Vian5g01330 1051 Pfam Nucleic acid binding protein NABP 307 715 IPR012940 -
Vian5g01330 1051 ProSiteProfiles Pumilio RNA-binding repeat profile. 897 932 IPR001313 GO:0003723
Vian5g01330 1051 MobiDBLite consensus disorder prediction 260 280 - -
Vian5g01330 1051 Gene3D - 696 1042 IPR011989 -
Vian5g01330 1051 MobiDBLite consensus disorder prediction 385 426 - -
Vian5g01330 1051 ProSiteProfiles Pumilio RNA-binding repeat profile. 969 1010 IPR001313 GO:0003723
Vian5g01330 1051 MobiDBLite consensus disorder prediction 293 340 - -
Vian5g01330 1051 ProSiteProfiles Pumilio RNA-binding repeat profile. 716 751 IPR001313 GO:0003723
Vian5g01330 1051 SMART pum_5 860 896 IPR001313 GO:0003723
Vian5g01330 1051 SMART pum_5 897 932 IPR001313 GO:0003723
Vian5g01330 1051 SMART pum_5 933 968 IPR001313 GO:0003723
Vian5g01330 1051 SMART pum_5 975 1010 IPR001313 GO:0003723
Vian5g01330 1051 SMART pum_5 788 823 IPR001313 GO:0003723
Vian5g01330 1051 SMART pum_5 716 751 IPR001313 GO:0003723
Vian5g01330 1051 SMART pum_5 752 787 IPR001313 GO:0003723
Vian5g01330 1051 SMART pum_5 824 859 IPR001313 GO:0003723
Vian5g01330 1051 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 107 1035 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01330 Vian-Chr5 35978358 35984499 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01330 K17943 - gmx:100787039 1800.02