Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01329 ATGCTGTCTGAATTTGAAAGAAGACCGATGATTGGGAGTAACGAGGGTTCTTTTGGAGATGAACTGGAGAAGGAGATAGGGATGTTGCTTCGTGAGCAACGCAGACAAGAGGCTGATGATCGTGAGAGAGAGCTTAATATCTTTAGGAGTGGATCAGCGCCTCCAACCGTGGAGGGTTCTTTGAGTGCTGTTGGAGGGTTGTTTGGCGGTGGCGGTGGCGCTGCTGGTGCTAGTGGTGCCTTTTCTGAGTTTCAAGGGACTAGAGATGTTAATGGGATTGTTTCTGAGGAAGAGCTTAGGTCTGATCCAGCTTATCTTACATACTATTACTCCAATGTGAATTTGAATCCTAGGCTGCCACCTCCTTTGATGTCAAAGGAGGATTGGAGGTTTCAGCAGAGACTTAAAGGTGGAGCTTCAGTTCTTGGTGGAATAGGAGATAGAAGGAAAGTGAACAGGACTGAAGAAAATGGTGGTAGGTCGATGTTTTCTACCCCACCGGGTTTTAACATGAGGAAACAAGAGAGTGAGGTGGACAATGAAAAAACAAGAGGTACTGCGGAGTGGGGTGGTGACGGACTAATTGGTTTGCCTGGACTAGGGCTGAGCAAACAAAAGAGCTTTGCAGAAATTTTCCAGGATGATTTGGGGGGTAATACCTCTGTCACGGGCCCTCCTTCTCGTCCAGCCAGCCGTAATGCATTTGATGACAATGATATCATTAGTTCTGCTGAAGCAGAGTTGGCTCATCTACGCCGTGAGTCTACGACCATAGATGCACCAAGGCCAGGAACGAATGTGCAAGGATCATCTGCTTCCCAAAATACTGGTCTGCCAGCTTCATATTCTTATGCTGCTGCAGTGGGGTCTTCCTTGTCGAGAAGCACTACTCCTGATCCACAGCATGTTGCTAGGGCTCCCAGTCCCTGCATCACACCTATTGGTGGTGGCAGAGCCATTGCTTCTGATAAGAGAGGTGTTTCCAGTCCAGATGCATTTGATGGTGTTTCATCTGGAATCAACGGGTCATCAGATCTTATGGCAGCATTGTCAGTGATGAATTTGTCAGCAGATGACATGTTAGATGGTGATAATCATTTGCCATCGCAGGTTGAATCAGAAGTTGATAATCACCGGAGATATCTTTTTGGTAGGCAAGGTGGTCAAGATCATGGAAAGCAACATGCTTATTTAAAGAAATCTGAATTAGCTCACTTGCAAAATTCAAGTAAGAGCAGGAGCGGATCTGAACCTAAAAATGCATCCTTGGACAGGCAGGTTGAGCTACAAAAGTCTAATATTCCTTCTAATAACTCATATTTCAAAGGATCACCTACCTCCCATTTTAGTAGAGGAGGTAGTTTACCTACTCAGTACCAGCCTTTAGATGGTACAAATTCGTCATTTAGTAACTATGGTATGAGTGGATATGCTGGAAATCCAGCATTGGCATCCTTGATGACTAATCAACTGGGCACTGGTAATCTGCCTCCATTGTTTGAAACGGTTGCTGCAGCATCAGCAATGGCATCCCCTGGAATGGACTCAAGAATTCTTGGAAGTGGTTTGGCTTCTGGAGCTACTGCTCCATCTGATGTGCACAATCTTGGTAGGATGGGAAATCAAATTCCAGGCACTGCTCTCCAGGCCCCTTTTGTTGATCCCATGTATCATCAGTACCTGAGAACATCTGAGTATGCAGCACAACTTGGTGCTCTTAGTGACCCCTCTGTCGACAGGTCCTACTTAGGTAATTCATACATGAACTTACTTGAGCTTCAGAAAGCTTATCTTGGGTCTATTCTCTCACCTCAGAAATCTCAATACAATGTACCACTGGGTGGTAAATCAGGAAGCTCCACTCCTCATGGTTATTATGGAAATCCTGCATATGGTGTTGGGTTGTCTTATCCAGGAAGTCCAATGGCAAACTCTGTTGTATCCACTTCCCCAGCAGCACCTGGAAGTCCTGTTAGGCACAATGAACTGAATATGCGTTTTGCTTCTGGAATGAGGAATTTAGCTGGGGTAATGGGACCTTGGCATGTAGATACTGGGAACATTGATGAAAGTTTTGCTTCTTCTCTGTTGGAGGAGTTTAAAAGCAACAAAACAAAGTGTTTTGAGCTTTCTGAAATTGCTGGTCACGTTGTGGAATTCAGTGCTGATCAATATGGGAGCCGATTTATTCAACAAAAGCTTGAAACAGCTACTACTGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCAGCCCAGAGAAGAGAATTGGCCAACAAACTTCTTGGGCATGTTCTGACACTGAGCCTTCAAATGTATGGTTGCCGAGTCATCCAGAAGGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTGCAAGAGCTTGATGGTAATGTCATGCGCTGTGTACGTGATCAGAATGGTAACCATGTCATTCAGAAGTGTATTGAATGCGTCCCTGAAGATGCAATCCATTTTATTGTCTCAACTTTTTTTGATCAAGTCGTTACGCTCTCAACCCATCCATATGGTTGCCGTGTGATACAGAGAGTACTGGAGCACTGCAAAGATCCTACAACACAGCAGAAAGTTATGGATGAAATTTTAGGGGCAGTTAGTATGTTAGCTCAGGACCAGTATGGCAACTACGTTGTTCAGCATGTTCTGGAGCATGGGAAGCCTCATGAGCGTTCTTCTATAATAAAGGAATTAGCAGGCAAGATTGTTCAGATGAGTCAACAGAAGTTTGCGTCCAATGTTGTGGAGAAATGTTTGACCTTTGGAGGTCCTTCTGAGCGCCAATTACTAGTACACGAGATGCTTGGCTCCACAGATGAAAATGAGCCTCTTCAGGCCATGATGAAAGATCAGTTTGCAAATTACGTTGTACAAAAGGTGCTGGAAACATGTGATGATCAGCAGCGCGAACTGATTCTTTCACGAATTAAGGTTCATTTAAATGCATTGAAGAAGTACACCTATGGGAAGCACATCGTTGCACGTGTAGAGAAACTTGTTGCTGCTGGAGAAAGGAGAATTGCAGCTCAGTCCCCCCAACCTGCTTAG 3144 0.445 MLSEFERRPMIGSNEGSFGDELEKEIGMLLREQRRQEADDRERELNIFRSGSAPPTVEGSLSAVGGLFGGGGGAAGASGAFSEFQGTRDVNGIVSEEELRSDPAYLTYYYSNVNLNPRLPPPLMSKEDWRFQQRLKGGASVLGGIGDRRKVNRTEENGGRSMFSTPPGFNMRKQESEVDNEKTRGTAEWGGDGLIGLPGLGLSKQKSFAEIFQDDLGGNTSVTGPPSRPASRNAFDDNDIISSAEAELAHLRRESTTIDAPRPGTNVQGSSASQNTGLPASYSYAAAVGSSLSRSTTPDPQHVARAPSPCITPIGGGRAIASDKRGVSSPDAFDGVSSGINGSSDLMAALSVMNLSADDMLDGDNHLPSQVESEVDNHRRYLFGRQGGQDHGKQHAYLKKSELAHLQNSSKSRSGSEPKNASLDRQVELQKSNIPSNNSYFKGSPTSHFSRGGSLPTQYQPLDGTNSSFSNYGMSGYAGNPALASLMTNQLGTGNLPPLFETVAAASAMASPGMDSRILGSGLASGATAPSDVHNLGRMGNQIPGTALQAPFVDPMYHQYLRTSEYAAQLGALSDPSVDRSYLGNSYMNLLELQKAYLGSILSPQKSQYNVPLGGKSGSSTPHGYYGNPAYGVGLSYPGSPMANSVVSTSPAAPGSPVRHNELNMRFASGMRNLAGVMGPWHVDTGNIDESFASSLLEEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLAAQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVHEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPQPA 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01329 1047 CDD Pumilio 708 1028 IPR033712 GO:0003723
Vian5g01329 1047 MobiDBLite consensus disorder prediction 259 276 - -
Vian5g01329 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 784 819 IPR001313 GO:0003723
Vian5g01329 1047 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 105 1031 - -
Vian5g01329 1047 SUPERFAMILY ARM repeat 695 1029 IPR016024 -
Vian5g01329 1047 Gene3D - 692 1038 IPR011989 -
Vian5g01329 1047 MobiDBLite consensus disorder prediction 157 171 - -
Vian5g01329 1047 FunFam Pumilio homolog 1 isoform 2 691 1038 - -
Vian5g01329 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 820 855 IPR001313 GO:0003723
Vian5g01329 1047 SMART pum_5 820 855 IPR001313 GO:0003723
Vian5g01329 1047 SMART pum_5 893 928 IPR001313 GO:0003723
Vian5g01329 1047 SMART pum_5 748 783 IPR001313 GO:0003723
Vian5g01329 1047 SMART pum_5 929 964 IPR001313 GO:0003723
Vian5g01329 1047 SMART pum_5 856 892 IPR001313 GO:0003723
Vian5g01329 1047 SMART pum_5 712 747 IPR001313 GO:0003723
Vian5g01329 1047 SMART pum_5 971 1006 IPR001313 GO:0003723
Vian5g01329 1047 SMART pum_5 784 819 IPR001313 GO:0003723
Vian5g01329 1047 Pfam Nucleic acid binding protein NABP 305 711 IPR012940 -
Vian5g01329 1047 MobiDBLite consensus disorder prediction 404 423 - -
Vian5g01329 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 893 928 IPR001313 GO:0003723
Vian5g01329 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 965 1006 IPR001313 GO:0003723
Vian5g01329 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 712 747 IPR001313 GO:0003723
Vian5g01329 1047 MobiDBLite consensus disorder prediction 151 191 - -
Vian5g01329 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 929 964 IPR001313 GO:0003723
Vian5g01329 1047 MobiDBLite consensus disorder prediction 255 276 - -
Vian5g01329 1047 Pfam Pumilio-family RNA binding repeat 934 967 IPR001313 GO:0003723
Vian5g01329 1047 Pfam Pumilio-family RNA binding repeat 860 895 IPR001313 GO:0003723
Vian5g01329 1047 Pfam Pumilio-family RNA binding repeat 788 821 IPR001313 GO:0003723
Vian5g01329 1047 Pfam Pumilio-family RNA binding repeat 979 1008 IPR001313 GO:0003723
Vian5g01329 1047 Pfam Pumilio-family RNA binding repeat 831 854 IPR001313 GO:0003723
Vian5g01329 1047 Pfam Pumilio-family RNA binding repeat 716 750 IPR001313 GO:0003723
Vian5g01329 1047 Pfam Pumilio-family RNA binding repeat 752 785 IPR001313 GO:0003723
Vian5g01329 1047 Pfam Pumilio-family RNA binding repeat 899 930 IPR001313 GO:0003723
Vian5g01329 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 856 892 IPR001313 GO:0003723
Vian5g01329 1047 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 692 1032 IPR033133 GO:0003723
Vian5g01329 1047 MobiDBLite consensus disorder prediction 432 462 - -
Vian5g01329 1047 MobiDBLite consensus disorder prediction 216 238 - -
Vian5g01329 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 748 783 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01329 Vian-Chr5 35962517 35968401 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01329 K17943 - gmx:100787039 1818.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01329 5 35962517 35968401 Vian5g01329 5 35962517 35968401 ECH