Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01302 ATGGGTCAGGGGCTGAGTTGCAGAGGGAGCCATGAGCATGGCCTATTCCGTGCTGTGCAGCATGGGGACCTAGACACTGTAGCAGCTTTGTTGCACACGCACCCTTCTCTCATGAACCACACCACTGTCTATGATCACCACTCCCCTCTTCATATTGCCGCTGCTAATGGCCAGATCCAGGTTTTATCATGGCTTTTGGATGGATCTGTGAATCCGGATGCGTTGAATCGCCAAAAGCAGACACCGCTAATGTTGGCTGCAATGCACGGGAAGATCGCCTGTGTGGAAAAGCTCCTCGAAGCCGGTGCTAATGTGTTAATGTTTGATGCGTGCTATGGAAGGACCTGTTTGCACTATGCAGCTTACTATGGCCATTCTTCTTGCCTTAAGGCAATTCTCTCTGCTGCTCAATCTAGTCCCGTGGCTGCTTCTTGGGGGTTTGCTCGGTTTGTGAATATTAGAGATGGAAGGGGTGCAACACCATTACACTTGGCAGCCCGTCAAAGACGGCCTGAATGTGTACATATTCTATTGTACAGTGGAGCTCTTGTTTCTGCTTCAACAGGAAGATATGGCTGTCCTGGGAGCACTCCTCTTCATCTTGCAGCCAAAGGGGGGTCCTTGGATTGCATCAGGGAACTGTTGGCATGGGGTGCTGATCGCCTTCAACGTGATGCTTCTGGGCGTATACCTTATGTAGTTGCTCTTAAGCACAGACACAACGCATGTGCAGCACTGCTGAATCTTTCGTCTGCTGAGCCTCTTGTATGGCCATCATCATTGAAGGTGATCAGTGAGCTTAATCCAGACGCCAAAGAGCTATTAGAGCAGGCCCTGATGAACGCAAACAGGGAAAGGGAGAAAAACATATTGAAAGGGAGTGATTACTCTCTTCCATCTCCAGCACACTCTGATGGGATAGATGACAGCATTTCTGAGGTTAGTGAGACGGAGTTATGTTGCATCTGCTTTGAGCAAGTGTGCACAATTGAGGTGCAAGACTGTGCTCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGTCACAACAAGCCTAACCCATCTACTTCTCGTATTGTCCCACCAGTTTGTCCATTCTGCAGAAGCAGCATAGCAAGATTGGTGGTTGTGAAAAAAGAAAGCTCTCATGACATCGATCAAGATGGTGTTGACATTACTTGTTCCAAGCCTAGCAAGTCAAGGAAAACCCGAAACATGAACGAGGGTGGCAGCAGCAGCATCAAGGGACTATCAAGTGTGAACTCATTTGGAAAGATGGGTGGCCGCAGCTCCGGAAAAATTGCTGCTGAAAATGAGTGGGAAGATGATAAACAACAGTGA 1344 0.4859 MGQGLSCRGSHEHGLFRAVQHGDLDTVAALLHTHPSLMNHTTVYDHHSPLHIAAANGQIQVLSWLLDGSVNPDALNRQKQTPLMLAAMHGKIACVEKLLEAGANVLMFDACYGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPECVHILLYSGALVSASTGRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHRHNACAALLNLSSAEPLVWPSSLKVISELNPDAKELLEQALMNANREREKNILKGSDYSLPSPAHSDGIDDSISEVSETELCCICFEQVCTIEVQDCAHQMCAQCTLALCCHNKPNPSTSRIVPPVCPFCRSSIARLVVVKKESSHDIDQDGVDITCSKPSKSRKTRNMNEGGSSSIKGLSSVNSFGKMGGRSSGKIAAENEWEDDKQQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01302 447 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Vian5g01302 447 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Vian5g01302 447 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Vian5g01302 447 Gene3D - 198 251 IPR036770 -
Vian5g01302 447 SMART ANK_2a 112 142 IPR002110 GO:0005515
Vian5g01302 447 SMART ANK_2a 10 39 IPR002110 GO:0005515
Vian5g01302 447 SMART ANK_2a 78 107 IPR002110 GO:0005515
Vian5g01302 447 SMART ANK_2a 45 74 IPR002110 GO:0005515
Vian5g01302 447 SMART ANK_2a 157 186 IPR002110 GO:0005515
Vian5g01302 447 SMART ANK_2a 194 223 IPR002110 GO:0005515
Vian5g01302 447 SMART ANK_2a 227 256 IPR002110 GO:0005515
Vian5g01302 447 SUPERFAMILY Ankyrin repeat 15 247 IPR036770 -
Vian5g01302 447 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Vian5g01302 447 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Vian5g01302 447 MobiDBLite consensus disorder prediction 405 427 - -
Vian5g01302 447 SUPERFAMILY RING/U-box 313 374 - -
Vian5g01302 447 Gene3D - 144 197 IPR036770 -
Vian5g01302 447 Coils Coil 272 292 - -
Vian5g01302 447 Gene3D - 9 143 IPR036770 -
Vian5g01302 447 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Vian5g01302 447 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Vian5g01302 447 Pfam Ankyrin repeats (3 copies) 112 184 IPR002110 GO:0005515
Vian5g01302 447 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Vian5g01302 447 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Vian5g01302 447 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 15 138 - -
Vian5g01302 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 387 IPR013083 -
Vian5g01302 447 MobiDBLite consensus disorder prediction 397 447 - -
Vian5g01302 447 Pfam Ankyrin repeats (many copies) 194 232 IPR002110 GO:0005515
Vian5g01302 447 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01302 Vian-Chr5 35751003 35753490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01302 12 330 Miscellaneous Gene Families AT5G60070 27.164 1.46e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01302 - - gmx:100800611 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00397 11 3682604 3685129 Vian5g01302 5 35751003 35753490 PCT