Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01295 ATGCCTTCTTCACTGTTTCTATGCACCTTCTTCATCCTCGCTGTCACCATCCTTCCCTCACCCACAGGTGCCCTTATCCTAACATTAGTTAACAACTGCAACTACACCGTTTGGCCAGCCATTCAACCTAACGCCGGCCATCCAGTCCTCGCCGGCGGCGGCTTTACTCTCCACACCCTCACCCACCTGTCCATCCCCGTCCCCGATGTCCACTGGTCAGGCCGGGTCTGGGCCCGTACTGGCTGCACCCACTCCGGCACCGCCTTCTCCTGCGCCAGCGGTGACTGCGGCGGCCGTCTCCAGTGCAACGGTGCCGGTGGTGCTCCTCCCGCCTCCCTGGCGCAAGTGGAGGCCCACCACGGAAACGGCGATTCCATCTCCTACGGCGTGAGCCTCGTCGACGGGTTCAACGTCCCCATGACTGTGACCCCACACGAGGGCAAAGGCGTGTGCCCGGTGGTTGGTTGCCGCGCCGACTTGCTAGCCACGTGTCCCCCCGTGCTGCAGCACCGTGTCCCCGCCGTTCATGGACCCGTCGTGGCGTGCAAGAGCGGGTGCGAGGCTTTCCATACCGACGAGCTCTGCTGTAGGAACCACTTCAACAGCCCCCACACGTGCCGTGAGTCCGTGTACTCCACCTTCTTCAAGCACGCGTGCCCCAACACTTTCACCTACGCCCACGACAACCCCTCTCTCATGCACCAGTGTTCCTCCCCGCACGAGATCAAGGTTATCTTTTGCCACTGA 747 0.6225 MPSSLFLCTFFILAVTILPSPTGALILTLVNNCNYTVWPAIQPNAGHPVLAGGGFTLHTLTHLSIPVPDVHWSGRVWARTGCTHSGTAFSCASGDCGGRLQCNGAGGAPPASLAQVEAHHGNGDSISYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPPVLQHRVPAVHGPVVACKSGCEAFHTDELCCRNHFNSPHTCRESVYSTFFKHACPNTFTYAHDNPSLMHQCSSPHEIKVIFCH 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01295 248 CDD TLP-PA 26 247 - -
Vian5g01295 248 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Vian5g01295 248 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Vian5g01295 248 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Vian5g01295 248 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Vian5g01295 248 PANTHER OS03G0233200 PROTEIN 12 247 IPR001938 -
Vian5g01295 248 FunFam Osmotin-like protein 26 247 - -
Vian5g01295 248 Pfam Thaumatin family 31 247 IPR001938 -
Vian5g01295 248 Gene3D Thaumatin 26 247 IPR037176 -
Vian5g01295 248 ProSiteProfiles Thaumatin family profile. 24 248 IPR001938 -
Vian5g01295 248 SMART tha2 27 248 IPR001938 -
Vian5g01295 248 PIRSF PR5 1 248 IPR001938 -
Vian5g01295 248 SUPERFAMILY Osmotin, thaumatin-like protein 26 247 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01295 Vian-Chr5 35682374 35683120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01295 1 247 Receptor kinase-like Gene Family AT5G38280 35.458 9.73e-44 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01295 - - gmx:100814312 464.922