Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01293 ATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGATCTTTGCAAAAACCCCGTCGACGGCTTCTCCGCCGGTTTGGTCGACGAAAGCAACATTTTTGAATGGAGTGTCACCATAATTGGACCACCTGATACTCTATACGAGGGAGGCTTTTTTAATGCTATTATGAGTTTTCCATCCAATTACCCAAATAGTCCACCGTCAGTGAAGTTCACCTCAGAGATATGGCATCCCAATGTATATCCTGATGGCCGGGTTTGCATATCGATTCTTCATCCTCCTGGTGAGGATCCAAATGGTTATGAGCTTGCAAGTGAACGATGGACACCTGTTCATACAGTAGAGAGTATAGTCTTGAGTATCATATCAATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCCGCAAAGGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTGAGCCGATGTGTAAGGAAGTCACAAGAAATGCTGTGA 501 0.4431 MASQASLLLQKQLKDLCKNPVDGFSAGLVDESNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRKSQEML 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01293 166 CDD UBCc 17 159 IPR000608 -
Vian5g01293 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 163 - -
Vian5g01293 166 SMART ubc_7 7 164 - -
Vian5g01293 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Vian5g01293 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Vian5g01293 166 Gene3D Ubiquitin Conjugating Enzyme 2 166 IPR016135 -
Vian5g01293 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
Vian5g01293 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Vian5g01293 166 FunFam ubiquitin-conjugating enzyme E2 7 2 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01293 Vian-Chr5 35668685 35673263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01293 11 131 Miscellaneous Gene Families AT3G17000 32.308 7.17e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01293 K10575 - gmx:100305813 314.309