Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01290 ATGGCAACGAATTCTTCCAATGGAGCAACAAAGCAACCCCCAATGCCATCCCCCTTGCGTTTTTCCAAGTTTTTTCAGTCTAATATGAGAATTCTGGTTACTGGAGGAGCTGGATTTATTGGCTCTCACCTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGGTTGTTGTTGCTGACAATTTCTTCACTGGATCTAAAGACAACCTTAAAAAATGGATTGGCCATCCAAGATTTGAGTTAATCCGCCACGATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGTCCTGCCTCTCCAATTTTCTACAAATACAATCCTGTAAAGACAATAAAAACAAATGTGATTGGAACACTGAACATGCTTGGGCTAGCTAAACGAGTGGGAGCAAGGATTTTGCTTACGTCTACATCAGAAGTATATGGAGATCCTCTCGTGCATCCACAACCAGAAAGCTATTGGGGAAATGTTAACCCTATTGGAGTTCGAAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATAGAAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTGGTCAGCAACTTCATTGCTCAAGCACTTCGTGGTGAAGCCTTAACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTCTGCTATGTCTCTGACATGGTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAGGCGAATTTACAATGATTGAACTTGCCGAGAATGTCAAAGAGCTTATTAATCCAGCAGTGGAGATAAAGATGGTTGAGAACACTCCTGACGATCCTCGTCAGAGAAAACCAGACATAACAAAAGCAAAGGAATTGCTGGGATGGGAACCAAAGGTCAAGTTGCGAGATGGCCTTCCTCTTATGGAAGAGGATTTCCGCCTGAGGCTTGGGGTTCCCAAGAAAAACTAA 1029 0.4218 MATNSSNGATKQPPMPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVVVADNFFTGSKDNLKKWIGHPRFELIRHDVTEQLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEALTVQVPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMIELAENVKELINPAVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRLRLGVPKKN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01290 342 CDD UGD_SDR_e 29 333 - -
Vian5g01290 342 Pfam GDP-mannose 4,6 dehydratase 32 326 IPR016040 -
Vian5g01290 342 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 15 337 IPR044516 GO:0042732|GO:0048040|GO:0070403
Vian5g01290 342 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 333 IPR036291 -
Vian5g01290 342 Gene3D - 28 335 - -
Vian5g01290 342 FunFam UDP-glucuronic acid decarboxylase 6 28 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01290 Vian-Chr5 35647200 35651444 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01290 31 325 Miscellaneous Gene Families AT4G00110 24.545 1.53e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01290 K08678 - gmx:100819843 681.404