Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01289 ATGGCATCTAATTCTTCTGATGGAGATTCTAGTAAATCACCGAAGCAGCCACCCCTGCCATCTCCCTTGCGTTTCTCCAAATTCTATCAGTCTAACATGAGAATCTTGATCACTGGAGGAGCTGGATTTATTGGTTCTCACCTAGTTGATAGATTGATGGAAATTGAAAAAAATGAGGTCATTGTTGTCGATAACTACTTTACTGGATCAAAGGATAATCTCAAAAAATGGATGGGTCATCCCAGATTTGAGCTTATCCGTCATGATATCACTGAACCTTTGATAATTGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCATCTCCTATTTTCTACAAATATAATCCGGTGAAGACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAGCGAGTTGGAGCAAGGATTCTACTTACCTCAACATCGGAGGTATATGGGGATCCTCTTGAGCATCCCCAAAATGAAAGCTATTGGGGAAATGTGAACCCTATTGGAGTTCGTAGTTGTTATGATGAGGGAAAGCGTGTAGCTGAGACTTTGATGTTTGACTATCATAGGCAGCATGGCTTAGAAATACGTGTTGCAAGAATCTTTAACACGTATGGGCCGCGCATGAATATTGACGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTTCGTGGTGAACCCTTGACGGTCCAGTCTCCAGGGACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTGGTCGATGGCCTTATCCGTCTCATGGAAGGATCCGACACGGGGCCAATCAACCTCGGAAATCCAGGTGAATTTACAGTGCTTGAACTTGCTGAGACAGTTAAGGAGCTAGTTAATCCAGATGTAGAGATAAAGATGGTGGAAAATACTCCTGATGATCCCCGGCAGAGAAAACCAGACATAACAAAAGCAAAGGAGTTACTTAAGTGGGAACCAAAGTTCCAGCTGCGAGATGGTCTACCTCTAATGGAAGAAGATTTCCGTTTGAGGCTTGGAGTTGTCAAAAAGTAA 1038 0.4335 MASNSSDGDSSKSPKQPPLPSPLRFSKFYQSNMRILITGGAGFIGSHLVDRLMEIEKNEVIVVDNYFTGSKDNLKKWMGHPRFELIRHDITEPLIIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQNESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGLEIRVARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQSPGTQTRSFCYVSDLVDGLIRLMEGSDTGPINLGNPGEFTVLELAETVKELVNPDVEIKMVENTPDDPRQRKPDITKAKELLKWEPKFQLRDGLPLMEEDFRLRLGVVKK 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01289 345 FunFam UDP-glucuronic acid decarboxylase 6 32 341 - -
Vian5g01289 345 CDD UGD_SDR_e 33 337 - -
Vian5g01289 345 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 21 340 IPR044516 GO:0042732|GO:0048040|GO:0070403
Vian5g01289 345 MobiDBLite consensus disorder prediction 1 22 - -
Vian5g01289 345 Gene3D - 30 154 - -
Vian5g01289 345 Gene3D - 155 340 - -
Vian5g01289 345 Pfam GDP-mannose 4,6 dehydratase 36 330 IPR016040 -
Vian5g01289 345 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 337 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01289 Vian-Chr5 35638835 35642838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01289 30 345 Miscellaneous Gene Families AT1G02000 23.932 5.08e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01289 K08678 - gmx:100818771 640.573