Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01286 ATGGCACCAAAGGCAGAGAAGAAGCCAGCAGAGAAGAAGCCTGTAGAGGAGAAGAAGTCCACAGTAGGAGACAAGGCTCCGGCGGAGAAGAAGCCTAAGGCAGGAAAGAAGCTTCCAAAGGAGGGAGGAGCTGGCGGTGATAAGAAGAAGAAGAGAAGCAAGAAGAGTGTGGAGACATACAAGATCTACATCTTCAAGGTCTTGAAACAGGTTCACCCTGACATTGGTATCTCCAGCAAGGCCATGGGCATCATGAACAGTTTCATCAACGATATCTTCGAGAAGCTTGCCCAGGAATCTTCTAGACTTGCCCGCTACAACAAGAAACCCACCATCACTTCAAGGGAAATCCAAACTGCGGTCAGGCTTGTATTGCCTGGAGAATTGGCCAAACATGCTGTCTCTGAGGGTACCAAGGCTGTTACCAAGTTCACCACTCATCGATCCGCGACAAACCCCATTAGCCAATCAGAAGACAAAACTTTCCCTATATTTATAATCCTCTTAAACTCTGATGATACTCACAACTTCATCTGCTCTCACACCAAGCTTCTGAAATCCCAATTCCAAACCCTAATTTACTTCAGAGCTCAAAGTTCTTCTCTAGATATGGCACCAAAGGCAGATAAGAAGCCAGCGGAAAAGAAACCAGCGGAGGAGAAGAAGTCCACCGTAGGAGAGAAGGCTCCGGCTGAGAAGAAACCGAAGGCAGGGAAGAAGCTTCCGAAGGAAGGAGGAGCTGGTGACAAGAAGAAGAGACACAAGAAGAGTGTGGAGACATACAAGATCTACATCTTCAAGGTTTTGAAGCAGGTTCACCCTGACATTGGTATCTCCAGCAAGGCCATGGGCATCATGAACAGTTTCATCAATGACATTTTTGAGAAGCTTGCCCAAGAATCTTCTAGACTTGCCCGCTACAACAAGAAACCCACCATCACTTCAAGGGAAATCCAGACTGCGGTTAGGCTTGTGCTACCCGGAGAATTGGCTAAACATGCCGTCTCTGAGGGTACCAAGGCTGTTACAAAGTTCACCAGTTCTTAA 1047 0.4718 MAPKAEKKPAEKKPVEEKKSTVGDKAPAEKKPKAGKKLPKEGGAGGDKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTTHRSATNPISQSEDKTFPIFIILLNSDDTHNFICSHTKLLKSQFQTLIYFRAQSSSLDMAPKADKKPAEKKPAEEKKSTVGEKAPAEKKPKAGKKLPKEGGAGDKKKRHKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01286 348 Gene3D Histone, subunit A 23 148 IPR009072 GO:0046982
Vian5g01286 348 ProSitePatterns Histone H2B signature. 316 338 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vian5g01286 348 MobiDBLite consensus disorder prediction 1 52 - -
Vian5g01286 348 Pfam Core histone H2A/H2B/H3/H4 4 123 IPR007125 GO:0003677
Vian5g01286 348 Pfam Core histone H2A/H2B/H3/H4 205 324 IPR007125 GO:0003677
Vian5g01286 348 MobiDBLite consensus disorder prediction 207 254 - -
Vian5g01286 348 MobiDBLite consensus disorder prediction 204 254 - -
Vian5g01286 348 SUPERFAMILY Histone-fold 232 348 IPR009072 GO:0046982
Vian5g01286 348 Gene3D Histone, subunit A 198 348 IPR009072 GO:0046982
Vian5g01286 348 PANTHER HISTONE H2B 223 347 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vian5g01286 348 SUPERFAMILY Histone-fold 39 147 IPR009072 GO:0046982
Vian5g01286 348 ProSitePatterns Histone H2B signature. 115 137 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vian5g01286 348 SMART h2b3 251 347 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vian5g01286 348 SMART h2b3 50 146 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vian5g01286 348 PRINTS Histone H2B signature 79 99 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vian5g01286 348 PRINTS Histone H2B signature 131 144 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vian5g01286 348 PRINTS Histone H2B signature 60 78 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vian5g01286 348 PRINTS Histone H2B signature 101 118 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vian5g01286 348 PRINTS Histone H2B signature 118 131 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vian5g01286 348 FunFam Histone H2B 1 148 - -
Vian5g01286 348 FunFam Histone H2B 202 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01286 Vian-Chr5 35617199 35622830 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01286 K11252 - vum:124842194 541.191