Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01255 ATGGACGACGAACTGCTCGAGCTGCAGCGACAATTCGAGTTCGCGCAGCAAGCCAAGTCGAGCATTCGATTATCAGAGCGAAACGTCGTCGAATTGGTCCAAAAACTGCAGCAACTCCAAATCATTGATTTCGAACTTCTCCACACTGTCTCCGGCAAAGAGTACATCACTCTCGATCAACTGAGGAATGATATGGTGGCTGAGGTGAAGAGATTAGGGCGCGTTTCTTTGATCGATCTCGCTGACTCTACTGGAGTTGACTTGTACTACGTGGAGAAGCAGGCGCAGAGCGTTGTAACAGCACACCGAGAACTCATGTTGACTCAGGGAGAAATCATGTCTAGCTCTTATTGGGACTCAGTCGCGGAAGAGATTAACGAGAGGCTTCAGGAGTGTAGTCAGATTGCGCTGACGGAGATCGCGGCGCAATTGAACGTCGGTTTGGACTTGGTTGCCTCCGTGTTGGACCCGCGCCTTGGAAGAATTGTGAAAGGAAGGCTTGAAGGTGGCCAGCTGTATACTCCTGCCTACGTGGCTCGTGTTGGTGCCATGGTTCGAGGCGCTGTGCGGGGCACCACTGTTCCAACCAATTTGACTGTGGTATGGAGTTCGTTGCAGCAGTTGCTGCAAGAAATTGACGGAACCAGCGGTTTGGCTGTTGAAGGATCTTTCTTCCAGTCATTGTTTAACGGACTGGTGAAGGAAGGGGAGGTTCTAGGGTCACTTCGTGCAGGAGTACATTGGACACCGGCTGTATTTGCTGTTGCACAAAGGGAGTTTGTGGAGTCATTTTTTTCTCAGAATTCTTTCATCACCTATGAGGCGCTGCACAAACTTGGAATTCCCCAGCCCATTCAATTTTTGCAGTCCAGATACCCTGAAGGCAAACCTTTGGTTACCACATTTGTTCATCAATCTATGATTGAGATGCTAGATGCTGCTACGGAGGATGCTATTGACCGTGGTAGCTGGAGTGATTCTCTTTCCTTGTTACCTTCATCTTTTACACCTCAAGATGCTTCTAAAATGTTGTCCTTTTGTCAATCTGTGCAAAATGCTCTTAAGTCTAACAAAGCACACATTTTTGGGGATTTTTATGTGTTGAGCAGCAGCTTTATAAAGGACATCTGTGATCATGTTGTGAAAGAGTTGGAGACGTTAGATGTTTCAAGGTCTGCTGGCTCTACCATGCCTGGAAATGTGAAAGTACCCAATGAAGCTAAAGTAGGACGGGAGTTGAGCAGGTTGAATGAGTCCAATGAGATGGCAAGTGATGTTGGTGCCAACAGGCAAGCTGATAAAGGATCAAAGAAGAAAAAGGGGAAAGCCACAGGGAATGCAGCAGTAAATCTATCTGAAAGTGGTGCAGATAACCAGGAACAGACTTTGACAAAATCTAAGAGAGGCCAGAAAAGAGGTAAGGACACATCTGCACAAACATCTGATTCAAAGACAGGTTCTAGGAAAGAGTTGCTTAAAATAAAAGAGGAAGATCTCAGTCCCTCAGAAGAATGGATCATGCAGAAAATTACAGCATTAGTTTCTGATTTTGAAGAACAAGGTATAGATGATCCTGAAATAATTCTTAGGCCTTTGGCTAACCAATTAAGGCCTACAATAATCAGTTCTTGGGTGGAGAAAAAGAAGGCACTGCATACAAACAATGCAGAAAGAATGAAACGTTTGCTTGATAATTTGCAGAAGAAACTTGACGAGTCTTTCTTAAACATGCAGCTGTATGAAAAGGCCTTGGAATTGTTTGAAGATGATCAATCAACTTCTGTTGTTCTGCATAGGCATTTACTAAGAACAGTAGCAGCTCCTATGGTGGATTTGCTTCTTCGTAACCTGGATGAGCACAACAAATTAAAGAATGGACTTGACGTGCAGGAAGCTCCAAATTCTGAATTTGTTTCACTTAGTCCTGCTGACAGAACTGCAATTTCTAAGAGTTTTCCAGGAGCTCTTGCAAACAAGGCTCTTGCTGTTGTTGAATCATTGGAAGGAAAGAGTGTGGAGACATTCATGGCTGCTTTTAGAATGGTTACAGAAGAGAGTGGGCTGCCTCTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTCTTACATTCATATCGTAAGGAATTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCACTTCTAGCAAAAGTTGTTTCTTTACTTTATATCCAGGTTTACCACAAAGCTCTTCATGCTCCTGGAAGGGCCATTTCCGTTGCCATTTCTCATTTAAGGGATAAGGTAGACGAGTCGGCATGCAAGATTTTAACGGATTATCAGACTGCCACAGTCACTCTTTTGACACTTGTAGCAGCTTCACCCGGTGAGGATGAGGATTGTGCATCTGATAGGATTTTGAGTACAAGGGAACTTCTAGAGAGCCAAATGAAGGACCTCAAAAGCTTGGTTTTGGGCACGACCCAATCTTCATAA 2460 0.4427 MDDELLELQRQFEFAQQAKSSIRLSERNVVELVQKLQQLQIIDFELLHTVSGKEYITLDQLRNDMVAEVKRLGRVSLIDLADSTGVDLYYVEKQAQSVVTAHRELMLTQGEIMSSSYWDSVAEEINERLQECSQIALTEIAAQLNVGLDLVASVLDPRLGRIVKGRLEGGQLYTPAYVARVGAMVRGAVRGTTVPTNLTVVWSSLQQLLQEIDGTSGLAVEGSFFQSLFNGLVKEGEVLGSLRAGVHWTPAVFAVAQREFVESFFSQNSFITYEALHKLGIPQPIQFLQSRYPEGKPLVTTFVHQSMIEMLDAATEDAIDRGSWSDSLSLLPSSFTPQDASKMLSFCQSVQNALKSNKAHIFGDFYVLSSSFIKDICDHVVKELETLDVSRSAGSTMPGNVKVPNEAKVGRELSRLNESNEMASDVGANRQADKGSKKKKGKATGNAAVNLSESGADNQEQTLTKSKRGQKRGKDTSAQTSDSKTGSRKELLKIKEEDLSPSEEWIMQKITALVSDFEEQGIDDPEIILRPLANQLRPTIISSWVEKKKALHTNNAERMKRLLDNLQKKLDESFLNMQLYEKALELFEDDQSTSVVLHRHLLRTVAAPMVDLLLRNLDEHNKLKNGLDVQEAPNSEFVSLSPADRTAISKSFPGALANKALAVVESLEGKSVETFMAAFRMVTEESGLPLKKLDKKLERTLLHSYRKELTSQVSAETDPVSLLAKVVSLLYIQVYHKALHAPGRAISVAISHLRDKVDESACKILTDYQTATVTLLTLVAASPGEDEDCASDRILSTRELLESQMKDLKSLVLGTTQSS 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01255 819 MobiDBLite consensus disorder prediction 416 490 - -
Vian5g01255 819 MobiDBLite consensus disorder prediction 447 463 - -
Vian5g01255 819 PANTHER E3 UFM1-PROTEIN LIGASE 1 2 818 IPR018611 GO:0061666|GO:0071569
Vian5g01255 819 Pfam E3 UFM1-protein ligase 1 4 288 IPR018611 GO:0061666|GO:0071569
Vian5g01255 819 MobiDBLite consensus disorder prediction 464 478 - -
Vian5g01255 819 Coils Coil 549 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01255 Vian-Chr5 35289002 35297954 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01255 1 785 EF-hand Containing Proteins AT3G46220 61.626 0.0 942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01255 K22755 - gmx:100808087 1372.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01255 5 35289002 35297954 Vian5g01255 5 35289002 35297954 ECH