Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01237 ATGGCTGAGAAGGATGACACCGAGGGGCGATGCCCAGCATGTCGTTCTCCTTATGATAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGAATGAAGTTACTATGGAGAAAAAGATGAAGACTCAGAAGGCGAAGTCAAAATCATCTGATGGGCGCAAGCAGCTCAGCAGTGTGCGAGTGATTCAGAGGAACCTTGTTTACATAGTTGGTTTACCTCTCAATCTTGCAGACGAAGATCTTCTTCAGCGGAGAGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAAGTATCAATGTCTCGAACGGCTGCTGGTGTCATCCAACAGTTTCCAAATGATACATGCAGTGTATATATAACTTATTCAAAAGAAGAGGAAGCAATTCGTTGTATTCAAAATGTACATGGATTTGTGTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTTCGAAGTGTGCCTTGCAGCAATCCGGATTGTCTATATTTGCATGAGATTGGCTCTCAAGAAGATAGCTTTACTAAAGATGAAATAATTTCAGCTTACACCAGAAGTCGAGTTCAGCAGATCACTGGTACAACTAACAATATGCAACGGCGGTCAGGGAATGTATTACCTCCTCCACTGGATGACAATATGAATTCTACTTCTGCAAATCCTATTGTGAAAAATCCTTCAAGTAACTCTGTTAGCACTGTTAGAGGTTCACCTCCGAATGGAATTTATGAGAGACATGTTCCCCTCCCTGCTAGTGCTGCGTGGGGTACCCCGGCAACAAATTGTCAGCCCCCAGCTGGAGGTCTATCTTATCCAAATGGGCCATCCAAGCCCAAACCTGATACAGGCAGCAGCTCACTAGCATTTTCTGCAGCTGTTACAGGCTCAATTCAGGCTTCTGATGTTCCAAAGAGACCACCATCGAGTGATGGGAGTCATAGTATGACAACTAGAGTGAAAAGTGAATTGTTGAAACCTGTTAAACAATACAACAATAGTGTGGACAGTCTGGTTAGTTCAGGAGAAAAATCTTTATCCTCTGATGCTCCTGTTCCTGTGAATTTGAACAGCCAGTTGTCTTCTCTACCATTGTCCCGAGATAGTGAGGGCAATTGTACTACAGCAAACACAATAAATTCTACTAACTTGACTGGACAGTCTTGTAATTCCGGTCCTGAGGAAGCAATGCCTGCTACCAATGAAGAGATTCCGAAGTTGTCCATTGAGTTGTCCTCAATTAACATTGATGGAAATGCTGAACATTGCAGTATAACCAAACCTAATAGCCCGCCTACCGAATATGTCTTGATTAAATCTCCCCAAATTCAAGGATCACAATATGAAGACAGATTTAGGGATGTAATAACTACAAATGTGGCTGGTAAAGCTATGCCGGATAACGAGGTTTGTAATTCTATGGAACAGGGTGATTGGAAATTGGATTCTCAATCTCAAGTAGCATCAAATGCCATGGAATTCGATGATGATGTAACATCTTTTGACAATCAAAGACTCAAGGATCCAGAAGTTGTTTGTCGTTCTTATTTGCCCAAGTCAACTGGTTTCCTTCATGTATCAGACCTTTCCAGCCCTCGTCTTCTGCAGCATGGTGAAAGTTGTACTGCCATGAGTGCAGGTTCTGTATCTGTTGATGAATCTATATTACATGCATCTAATATATTATGCAACGACCACTCTGATAAATTGGTCAGCAGCAGCTCCTATAGTCTGCTTAATGACGAAAGAAATGGTCATAGCATTCAAAGATTAGTTAGTGAAGCAGTAAATTCTGGACATGATGTTACTATGGATAAGGGTGAAAGTAGTATAATTTCAAATATTTTGTCCATGGACTTTGATGCCTGGGATGACTCACTAACATCACCACATAATTTAGCTAAGTTGTTGGGTGACAATACTGAGAACCAGTCTGGTCCTTTAAACAAATCTAGTTCTTGGAAAGTTCACAGTAACAATCAATCAAGATTTTCTTTTGCGAGGCAGGAGGAATCCAAAATCCAAATGTTTGATGCGAATGCTTCTTATGGTGTAAACCATCAACGTCCAAATAATAAAGTTTTCCAGAATTTTTCAGAAAGAGACTTGTATATGGATAAGTTGGGCATTGCGAATGGATTTCGTACAAGTAACTTTGAGGAAGCTGAAAATATTGGTAGTGGTCATTTCATTTCATCTAATAAGCTTTCAGCCATCTCAAGAGCACAAGTTTCGGCCCCACCGGGATTTTCCATTCCAAGCAGGCCACCACCACCTGGTTTTTCTTCCAATGAGAGAGTGGATCAGGCTTTTGACTCCATTTCTGGGAATTCTATGCTTGATCATTCTTCCCTCTTGAGAAATTCATATCAGTCACCTTCAGCTGGAAACCTTGGTGGTGCTGGGGATATTGAATACATGGACCCTGCTATTTTGGCAGTTGGCAAAGGGAGACTTCAAGGTGCACTGAACAGCCCCACACTGGACATTCGATCCAATTTTATGCCTCAACTAAATTACTTTGAAAATGATGCCAGACTGCAATTATTGATGCAAAGATCTCTGTCACCACAGCAAAACCATAGATTTTCTGAAATTGGGAATACTTTTTCTCAACTTGGTGATTCTTTTGCTGTTTCTTCAAGGTTAGATCAATCACAAGTCAGTAATCTGAGCCCATTCCAACAGCTGTCTATGCAGCAGTCTGCAAATGCAGTCTTGTCAAATGGGCAATGGGATGGGTGGAATGAGGTGCAGACTGGAAATGGTTTGGGTGTGGCCGAGCTTTTGAGAAATGAAAGACTTGGGTTTAATAAATTTTACTCAGGATACGATGATTCAAAATTTCGGATGCCAAATTCCGGGGATCTTTACAACAGAACATTTGGGATGTGA 2922 0.4131 MAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVNEVTMEKKMKTQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRSVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGTTNNMQRRSGNVLPPPLDDNMNSTSANPIVKNPSSNSVSTVRGSPPNGIYERHVPLPASAAWGTPATNCQPPAGGLSYPNGPSKPKPDTGSSSLAFSAAVTGSIQASDVPKRPPSSDGSHSMTTRVKSELLKPVKQYNNSVDSLVSSGEKSLSSDAPVPVNLNSQLSSLPLSRDSEGNCTTANTINSTNLTGQSCNSGPEEAMPATNEEIPKLSIELSSINIDGNAEHCSITKPNSPPTEYVLIKSPQIQGSQYEDRFRDVITTNVAGKAMPDNEVCNSMEQGDWKLDSQSQVASNAMEFDDDVTSFDNQRLKDPEVVCRSYLPKSTGFLHVSDLSSPRLLQHGESCTAMSAGSVSVDESILHASNILCNDHSDKLVSSSSYSLLNDERNGHSIQRLVSEAVNSGHDVTMDKGESSIISNILSMDFDAWDDSLTSPHNLAKLLGDNTENQSGPLNKSSSWKVHSNNQSRFSFARQEESKIQMFDANASYGVNHQRPNNKVFQNFSERDLYMDKLGIANGFRTSNFEEAENIGSGHFISSNKLSAISRAQVSAPPGFSIPSRPPPPGFSSNERVDQAFDSISGNSMLDHSSLLRNSYQSPSAGNLGGAGDIEYMDPAILAVGKGRLQGALNSPTLDIRSNFMPQLNYFENDARLQLLMQRSLSPQQNHRFSEIGNTFSQLGDSFAVSSRLDQSQVSNLSPFQQLSMQQSANAVLSNGQWDGWNEVQTGNGLGVAELLRNERLGFNKFYSGYDDSKFRMPNSGDLYNRTFGM 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01237 973 MobiDBLite consensus disorder prediction 201 337 - -
Vian5g01237 973 SMART rrm1_1 69 150 IPR000504 GO:0003723
Vian5g01237 973 SMART rrm2_1 69 150 IPR003954 GO:0003676
Vian5g01237 973 SUPERFAMILY RNA-binding domain, RBD 62 148 IPR035979 GO:0003676
Vian5g01237 973 MobiDBLite consensus disorder prediction 287 329 - -
Vian5g01237 973 MobiDBLite consensus disorder prediction 201 247 - -
Vian5g01237 973 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 6 967 IPR039780 GO:0004842|GO:0030014
Vian5g01237 973 Gene3D - 69 150 IPR012677 -
Vian5g01237 973 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 148 IPR000504 GO:0003723
Vian5g01237 973 CDD RRM_CNOT4 63 162 IPR034261 -
Vian5g01237 973 MobiDBLite consensus disorder prediction 756 775 - -
Vian5g01237 973 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 69 150 - -
Vian5g01237 973 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 154 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01237 Vian-Chr5 34996982 35002740 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01237 K10643 - gmx:100801880 1647.48