Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01231 ATGGCAGCGTCGCGAATCGTAGCCCATCCACCGCCCTATCTCCACCGCCAGTGTTCGCCGTCAGACGCCGTGTCGTTCACCAACCCCACGCTTCACGCGAAACGGTACCGTAACCTCAGCATTCGTTCTTCTCTTCACGAGGGGAAGCAGAAGAAGAACGATCTCGCTGATAAACCTCACTCAGTCGAATTGCGAACCAGCCCCAACGACGTCCGCGATCCGCTCGTTCTTCCGCGGCCTTTATCTGCTTCAGTTTCTGACGGTTCTGGCCTTCGTGTGGCATATCAGGCTGTTGAAAGGTGGATTGTGGACAGAGCAGTTTTGCCAATTGAGAATTCTTTAGGAGGGAGTATCCATCGAAATTATGACCTTTTACTCCGCCATAGTTTACACATAGTAGGAGAAGTAAAATATGCTGTCCGTCACTGTTTGATGGCCAACCATGGTGTTAAACTTGAGGATTTGAACCGGGTTCTAAGTCATCCACAGGCTCTAGCTCAATGTGAGAACACACTGACAAAATTGGGATTGGTGCGAGAAGCAGTTGATGATACAGCTGGTGCTGCTAAGCAAGTTGCCTTGCTCGGACTACAAGATGCAGGAGCAGTTGCTAGTTCTTCTGCTGCAAAGATCTATGGGTTGAATATACTTGCTGAAGACATTCAGGATGATAGTGATAATGTCACTCGATTTTTAATGTTAGCGCGAGAACCTATAATTCCAGGCACTGATAGGCCATTTAAGACAAGCATAGTTTTTTCTTTAGAAGAAGGCCCTGGGGTTCTTTTCAAGGCCCTTGCTGTTTTTGCATTGCGTCAGGTTAACCTCACAAAGATTGAAAGCCGACCTCTGCGAAACCAACCTCTACGAGCATCAGATGATAGCAGCAATTCCAAGTACTTTGATTATCTTTTTTATGTTGATTTTGAAGAATCAATGGCTAATCAGAATGCACAAAATGCCCTAAGACATCTAAAGGGAGCTATCCAGTGGACACTAGCTCGACGACTGCAGAATAGGGTTGCTTTTGCGTGCGATGTGGTACTTCCAGTGGTCAAATCATGTTAA 1068 0.4654 MAASRIVAHPPPYLHRQCSPSDAVSFTNPTLHAKRYRNLSIRSSLHEGKQKKNDLADKPHSVELRTSPNDVRDPLVLPRPLSASVSDGSGLRVAYQAVERWIVDRAVLPIENSLGGSIHRNYDLLLRHSLHIVGEVKYAVRHCLMANHGVKLEDLNRVLSHPQALAQCENTLTKLGLVREAVDDTAGAAKQVALLGLQDAGAVASSSAAKIYGLNILAEDIQDDSDNVTRFLMLAREPIIPGTDRPFKTSIVFSLEEGPGVLFKALAVFALRQVNLTKIESRPLRNQPLRASDDSSNSKYFDYLFYVDFEESMANQNAQNALRHLKGAIQWTLARRLQNRVAFACDVVLPVVKSC 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01231 355 SUPERFAMILY ACT-like 231 330 IPR045865 -
Vian5g01231 355 FunFam Arogenate dehydratase 142 224 - -
Vian5g01231 355 MobiDBLite consensus disorder prediction 43 73 - -
Vian5g01231 355 ProSiteProfiles ACT domain profile. 250 339 IPR002912 -
Vian5g01231 355 Pfam Prephenate dehydratase 94 238 IPR001086 GO:0004664|GO:0009094
Vian5g01231 355 CDD PBP2_Ct-PDT_like 94 238 - -
Vian5g01231 355 ProSiteProfiles Prephenate dehydratase domain profile. 51 236 IPR001086 GO:0004664|GO:0009094
Vian5g01231 355 MobiDBLite consensus disorder prediction 43 67 - -
Vian5g01231 355 CDD ACT_CM-PDT 248 326 - -
Vian5g01231 355 Gene3D - 94 232 - -
Vian5g01231 355 SUPERFAMILY Periplasmic binding protein-like II 93 242 - -
Vian5g01231 355 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 92 329 - -
Vian5g01231 355 ProSitePatterns Prephenate dehydratase signature 2. 276 283 IPR018528 GO:0004664|GO:0009094
Vian5g01231 355 Gene3D - 141 225 - -
Vian5g01231 355 ProSitePatterns Prephenate dehydratase signature 1. 212 234 IPR018528 GO:0004664|GO:0009094
Vian5g01231 355 Gene3D - 243 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01231 Vian-Chr5 34928676 34933437 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01231 K05359 - gmx:100787387 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01231 5 34928676 34933437 Vian5g01231 5 34928676 34933437 ECH