Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01220 ATGTCGGCACCGCAGAAATTTCTCTGCACTCTCTCCCACGCCTTTCCTCGCTCTTCTTCTCTCTGCACCTTCAAATCTAGAACCTTCCTTTTCCTTCCATTCGTTCGCTCTTACCTCACCCTAACTCCCTTGCTCTCACCAATGCCTCGCAATCAGCGAAGTGGCGCGCACATGGAGCGGCGATGGAAAGAGAAAGCCAAAACTGAGGCGAAGTTGCCGGCTACGGGAGACGTAGCTGCCGTAACTGCTTCGGAAACTGTTACTAATAAGATTGCTGGATTGAGTATTGGTGATAACGGTGGGAAAACCGGTGCGCATGGTTCGATTTGGAAACCTAAATCTTACGGAACTGCGAGTGGAGGCGCTGTTACTGAAGTGGAAAATGGAGCTGGAGTTGAGGCAAGTGTGGCTTCGACGCAAAAGGATAGTGGAAGTAGTTTGAGTAAGATATTTCGAGGTAATCTGTTAGAGAAATTCACTGTGAACAACTCCACGTACACACGTGCACAAATCAGAGCGACTTTCTATCCCAAATTTGAAAATGAAAAGTCGGATCAAGAGGTCCGGACCAGGATGATTGAGTTGGTAGCAAAAGGGTTGGCTACCTTAGAGGTTTCACTTAAACATTCTGGCTCTCTTTTTATGTATGCGGGTCATGAGGGTGGAGCTTATGCAAAAAACAGTTTTGGAAATATATATACTGCCGTTGGTGTATTTGTTCTTGGACGGATGTTTCGTGAGGCATGGGGAACTGAAGCTTCAAAAAAGCAGGCTGAATTTAATAATTTTCTTGAGAGAAACCACATGTGCATATCAATGGAACTAGTAACCGCTGTTCTTGGAGACCATGGACAGCGTCCCCAAGAAGATTATGCGGTAGTTACGGCAGTTACTGAATTGGGCAATGGAAAGCCAAAGTTCTATTCAACTCCTGAGATAATAGCTTTCTGTCGAAAATGGCGCCTTCCAACAAATCATGTGTGGCTGTTTTCAACAAGAAAATCAGCCACTTCTTTCTTTGCTGCGTATGATGCCTTATGTGAGGAGGGTACTGCAACGTCTGTTTGCAAGGCTCTTGACGAAATTGCTGACATCTCAGTACCAGGTTCAAAAGACCATGTTAAGTCCCAAGGTGAAATTTTAGAAGGTCTTGTGGCTCGTCTTGTAAGTCATGATAGTTCAAACCAGATAGAGAAAACTTTGAAAGAATTTCCACCTCCACCTGCTGATGGAGTGGCCCTTGATTTTGGACCAAGTCTAAGGGAAATATGTGCAGAAAATAGAGATAATGAAAAACAGCAAATAAAAGCACTTCTCGAGAGTGTTGGTAGTTCTTTTTGTCCTAGCCAGTTGGATTGGTTTGGGACTCATGGTGCTGATCATCATTCAAGAAACGTGGACAGATCTGTTCTTTCAAAATTTTTACAAGCCCATCCTGCAGACTATTCAACTAAAAAGTTGCAGGAAGTTGTTCGGTTAATGAGGGAGAAACGCTACCCTGCTGCCTTCAAATGTTATCATAACTTCCACAAGGTTGATGGCATGTCAAGTGACAATGTTTTCTATAAAATGGTCATTCATGTACACAGTGATTCTGGTTTTCGACGATACCAGAAAGATATGAGGCTTAAGCCAGGATTATGGCCATTATATCGAGGTTTTTTTGTTGATGTAAATTTATTTAACGCAAACAAGGAGACAGCTGCTGAAATTTCTAGTAACAGTGTAAAGGAAACTGGTAGCAACAATGCTGGGGAAGATGACTTTGCGGACGAAGATGCAAATTTAATGGTCAAATTGAAATTTCTTACATATAAGCTGCGAACGTTTCTTATTCGAAATGGCCTGTCAATTCTGTTCAAAGAAGGTCCAGCTGCTTACAAGTCTTATTACCTCAGACAAATGAAAATTTGGGGAACGTCTCCAGCAAAGCAGAGAGAACTTAGCAAGATGCTTGATGAATGGGCTGTATATATACGAAGGAAGTGTGGAAATAAGCAACTGTCATCATCAACATATCTGAGTGAAGCGGAACCATTTCTTGAACAGTTTGCAAAACGTAGTCCACAGAACCAAGTTCTGATAGGTTCTGCGGGCAATTTAGTTAGAACTGAAGATTTCTTGGCTATTGTTGAGGGAGGCCTGGATGAAGAAGGTGATCTTCTGGCAGAGCGTGAGATAGCACTTCCAGGGTCTAATATCTCAGTCAAAGATACAGTTCCAAAATATGAAGGGTTGATTGTATTCTTTCCTGGAATACCTGGTTGTGCCAAGTCCTCCCTTTGCAAAGAATTGCTAAATGCCGAAGGAGGGCTAGAAGATGCTCGACCACTTCATAGTCTCATGGGTGACCTGATTAAAGGAAAATATTGGCAGAAAGTGGCTGAAGAGCGCAGAAAGAAACCAAATTCGATAATGCTTGCTGACAAGAATGCCCCAAATGAAGAAGTTTGGAAACTGATAGAAGACATGTGTCACAAAACCAGGGCATCTGCTGTACCGGTTGTAGCTGAATCTGAAGGAACCGATTCAAATCCTTTTTCTCTTGATGCATTAGCTATTTTCATTTTTCGCGTGCTTCAACGAGTCAATCATCCGGGAAATCTTGACAAAGCATCTCCAAATGCTGGCTATGTGCTGCTAATGTTTTATCATCTCTATGAGGGCAGGAGCCGTAAAGAGTTTGAGGGTGAATTAATTGAGCGTTTCGGGTCACTTGTCAAGATGCCACTACTGAAATCTGATAGGGATCCCCTTCCTAACCCAGTGCAGTCCATTTTGGAGGAAGGAATTGATTTATATAAACTTCACACTTATAGACATGGAAGATTAGAGTCTACCAAAGGATCCTACGCAAAAGAATGGTTAAAATGGGAGAAACAGTTACGGGATATACTTTGTGGAAATGCCGAGTATTTTAATTCTATTCAGGTCCCATTTGAATTTACTGTCAAGCAAGTGTTGGAACAGTTGAGAAGCATTGCGAAGGGAGATTACACACCACCGGATACTGAAATAAGGAAATTTGGTACCATTGTTTTTGCTGCTCTCACCACGCCAGTTACTGAAATTAAAGGCGCCCTCAATAAATTGGCCGAGAGTAATCCCAAGATTGACGCATTCCTTAAAGACAAACATCTCGAGAACCTTAATCGAGCTCATGTGACTCTTGCCCACAAGAGAAGCCACGGCATCAAAGCTGTAGCTGATTATGGTATCTATCTTAATAAAAAGGTTCCGGTGGAGTTAGCAGCACTACTCTTCTCAGATAAAATGGCTGCGTTGGAAGCTTGTCCCGGCTCAGTGGAAGGTGAGAAGATAGTCTCAAAAAATCCGTGGCCTCATATAACCTTATGGACTGCTCAAGGTGTTGCACCCAAGGAGGCCAACATGTTACCGCAGTTGTTTGCCGCGGGGAAAGCATCCCGAATTGACTTCAATCCTCCCATCATTTTATCTGGCACAATTGACTTTTATTGA 3480 0.4279 MSAPQKFLCTLSHAFPRSSSLCTFKSRTFLFLPFVRSYLTLTPLLSPMPRNQRSGAHMERRWKEKAKTEAKLPATGDVAAVTASETVTNKIAGLSIGDNGGKTGAHGSIWKPKSYGTASGGAVTEVENGAGVEASVASTQKDSGSSLSKIFRGNLLEKFTVNNSTYTRAQIRATFYPKFENEKSDQEVRTRMIELVAKGLATLEVSLKHSGSLFMYAGHEGGAYAKNSFGNIYTAVGVFVLGRMFREAWGTEASKKQAEFNNFLERNHMCISMELVTAVLGDHGQRPQEDYAVVTAVTELGNGKPKFYSTPEIIAFCRKWRLPTNHVWLFSTRKSATSFFAAYDALCEEGTATSVCKALDEIADISVPGSKDHVKSQGEILEGLVARLVSHDSSNQIEKTLKEFPPPPADGVALDFGPSLREICAENRDNEKQQIKALLESVGSSFCPSQLDWFGTHGADHHSRNVDRSVLSKFLQAHPADYSTKKLQEVVRLMREKRYPAAFKCYHNFHKVDGMSSDNVFYKMVIHVHSDSGFRRYQKDMRLKPGLWPLYRGFFVDVNLFNANKETAAEISSNSVKETGSNNAGEDDFADEDANLMVKLKFLTYKLRTFLIRNGLSILFKEGPAAYKSYYLRQMKIWGTSPAKQRELSKMLDEWAVYIRRKCGNKQLSSSTYLSEAEPFLEQFAKRSPQNQVLIGSAGNLVRTEDFLAIVEGGLDEEGDLLAEREIALPGSNISVKDTVPKYEGLIVFFPGIPGCAKSSLCKELLNAEGGLEDARPLHSLMGDLIKGKYWQKVAEERRKKPNSIMLADKNAPNEEVWKLIEDMCHKTRASAVPVVAESEGTDSNPFSLDALAIFIFRVLQRVNHPGNLDKASPNAGYVLLMFYHLYEGRSRKEFEGELIERFGSLVKMPLLKSDRDPLPNPVQSILEEGIDLYKLHTYRHGRLESTKGSYAKEWLKWEKQLRDILCGNAEYFNSIQVPFEFTVKQVLEQLRSIAKGDYTPPDTEIRKFGTIVFAALTTPVTEIKGALNKLAESNPKIDAFLKDKHLENLNRAHVTLAHKRSHGIKAVADYGIYLNKKVPVELAALLFSDKMAALEACPGSVEGEKIVSKNPWPHITLWTAQGVAPKEANMLPQLFAAGKASRIDFNPPIILSGTIDFY 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01220 1159 PANTHER TRNA LIGASE 1 103 1159 IPR038837 GO:0003972|GO:0006388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01220 - - gmx:100815563 2096.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01220 5 34718250 34749771 Vian5g01220 5 34718250 34749771 ECH