Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01219 ATGGCGTTCAGAGGAAAAGAAATGATGAAGAAAATTCTGAAGACGGTGGGAGAGAATGGTTTGAATAAAAGAGATAAGGAAACGTTGGAGAAATGCATGCCTCGAAGCAAGGTTGTGATGAATCGCGCAAAACGTGGTCTCTTTGCCGGGCGACACATTCAGTTTGGAAATTGTGTCAGTGAAGATGGCGGTAACAAGACAAGGAGAACTTGGAAACCGAATGTGCAGGAAAAGCGGCTCTTCAGCTACATCCTAGATCGTCACGTTCGTGTTAAAGTGACCACACATGCCATCCGATGCATAGACAAGGCAGGTGGGATTGATGAGTACTTGCTGAAAACTCCTTATCACAAGATGGACACTGAAATGGGCATTCTCTGGAAGGCAAAAATTGAGAAATTGTATGAAGAGCTTGGCCAAAAGGAGGTTGTATTCTTTTCACCTGAGGCTGAAGCGAAGTTTGAGCAGGACTTTAAAGATTTGAAACTGTCTGAAAGGGAAGCACGAAAGGAGGTTAGAAGAAAGATGTACACTGGGATGAGCAAGCACGAACGGGTTCCCATTTCGTATATCTTAGCTTCTGACAAGCTCAAAGCTGGAAGCGTTGTTTCTAATTAA 618 0.4385 MAFRGKEMMKKILKTVGENGLNKRDKETLEKCMPRSKVVMNRAKRGLFAGRHIQFGNCVSEDGGNKTRRTWKPNVQEKRLFSYILDRHVRVKVTTHAIRCIDKAGGIDEYLLKTPYHKMDTEMGILWKAKIEKLYEELGQKEVVFFSPEAEAKFEQDFKDLKLSEREARKEVRRKMYTGMSKHERVPISYILASDKLKAGSVVSN 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01219 205 Pfam Ribosomal L28 family 45 104 IPR026569 GO:0003735
Vian5g01219 205 Hamap 50S ribosomal protein L28 [rpmB]. 42 110 IPR001383 GO:0003735|GO:0005840|GO:0006412
Vian5g01219 205 FunFam 54S ribosomal protein L24 47 118 - -
Vian5g01219 205 SUPERFAMILY L28p-like 43 119 IPR034704 -
Vian5g01219 205 Gene3D Ribosomal protein L28/L24 47 118 IPR037147 GO:0003735
Vian5g01219 205 PANTHER 39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL 1 184 IPR026569 GO:0003735
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01219 Vian-Chr5 34697162 34699592 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01219 K02902 - gmx:100791613 362.459