Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01217 ATGTTACTAAAACTCAAGTTGTCTACACATTACATCGCCAGCAATCCCTCCAAGTTCCACATGGATGACACGTGTGTCTCTGTATTTTCTTCACACTCAAAAACCACCTCTTTCTTTCATCTTCCACCTCAAATTGCATCTGTAATGGGAAACACAACTACCCTTTTGTTCTTCCTCTCAGTTCTTCTGTGCCATGGAGCAATGGCCATCCCTGAAGGTGAAGAAGACAACTTGTTCTTGATGCATAAACCTAAGAGAATGGTGAAGACTGATGCAGGGGAAATGCGTGTGCTGAAAACCCAAAGTGGTTGTAGGAGGCTTTTAGATAGGCACATGCACATTGCCTTCATCACTATGGAACCAAACTCCTTGTTCGTCCCTCACTACCTTGACTCCAATCTCATCATATTCATCCATAAAGGAGAAGCAAATTTGGGATTCATATATGATGATGAACTGGTGGAAAGGAGATTGAAGGCAGGGGATGTGTATGTGATTCCATCAGGTTCAGCATTTTATTTTGTGAACATGGAGGAAGGTCAGAGACTTCACATCATCTGCAGCATTGACCCTTCTACAAGTTTGGGATTAGATACCTTCCATTCTTTCTATATTGGTGGAGGAGCCAATTCACACTCACTGCTTTCTGAATTCGGACCAGCTATTCTTGAAACTGCATTTAATGAATCAAGAATGGAGGTTGAAAGTATCTTTTATAAGGAACTAGATGGGCCAATCATGTACATGGATGATTCTCATGCACCTAGCTTAGGGACTAAATTCCTTAAACTGAAGAAGGAAGAAAAAGAGCAACAACAACTGGACAAAATGCTGCAAGACCAAGAAGAAGAAAAAGAAGAGAAGAAGCAAACAAGTAGTTCATGGGAAAAACTCTTGGACAATGTATTTGGCAAGGTGAATGAGAAGACAGAGAGCAAAAACAGTGTTGATTGGAGCAAGGCAACAAATCTCTATGACAAAATATCTGATTTCAGAAACGATTATGGTTGGAGCAAGGCACTGGATGGAGTGCAGTATTCTCCACTCACCAAACCTGACACTGGCCTTTTCTATGTCTATCTCAAAGCTGGATCCATGTTGGGACCTCATGTGAATGCAAGGGCATCTGAGTATACCATAGTGCTGAAGGGCTGTGGGGAGCTTCATATAGTGTATCCAAATGGAAGCAAAGCAATTAGCACTGAAATCAAACAGGGGGACGTGTTTGTTGTTCCAAAATCACTCCCCTTTTGTCAAATAGCATCAAGGGATGGACCCTTAGAGTTCTTTGGCTTCTCTACCTCTGCCAAAGAGAACAAGCCACTGTTTCTGGCTGGCTCTGTGTCAATTCTTAGGACCATGCTGGGGCCTCAGCTTGCGGCGGCGCTTGGGGTGAGTGTAGACACTTTGCGGCGTGCCCTTGATCCTCAGGATGAACTTGTGATCTTTCCGTCAACATGGTCTGAACCACCATAA 1476 0.4322 MLLKLKLSTHYIASNPSKFHMDDTCVSVFSSHSKTTSFFHLPPQIASVMGNTTTLLFFLSVLLCHGAMAIPEGEEDNLFLMHKPKRMVKTDAGEMRVLKTQSGCRRLLDRHMHIAFITMEPNSLFVPHYLDSNLIIFIHKGEANLGFIYDDELVERRLKAGDVYVIPSGSAFYFVNMEEGQRLHIICSIDPSTSLGLDTFHSFYIGGGANSHSLLSEFGPAILETAFNESRMEVESIFYKELDGPIMYMDDSHAPSLGTKFLKLKKEEKEQQQLDKMLQDQEEEKEEKKQTSSSWEKLLDNVFGKVNEKTESKNSVDWSKATNLYDKISDFRNDYGWSKALDGVQYSPLTKPDTGLFYVYLKAGSMLGPHVNARASEYTIVLKGCGELHIVYPNGSKAISTEIKQGDVFVVPKSLPFCQIASRDGPLEFFGFSTSAKENKPLFLAGSVSILRTMLGPQLAAALGVSVDTLRRALDPQDELVIFPSTWSEPP 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01217 491 MobiDBLite consensus disorder prediction 272 293 - -
Vian5g01217 491 Gene3D Jelly Rolls 327 489 IPR014710 -
Vian5g01217 491 Pfam Cupin 323 467 IPR006045 -
Vian5g01217 491 Pfam Cupin 83 187 IPR006045 -
Vian5g01217 491 CDD cupin_7S_vicilin-like_N 87 257 - -
Vian5g01217 491 Gene3D Jelly Rolls 72 267 IPR014710 -
Vian5g01217 491 Coils Coil 264 298 - -
Vian5g01217 491 PANTHER OS03G0336100 PROTEIN-RELATED 53 486 - -
Vian5g01217 491 CDD cupin_7S_vicilin-like_C 330 479 - -
Vian5g01217 491 SMART Cupin_1_3 79 235 IPR006045 -
Vian5g01217 491 SMART Cupin_1_3 322 471 IPR006045 -
Vian5g01217 491 SUPERFAMILY RmlC-like cupins 50 479 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01217 Vian-Chr5 34685517 34688420 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01217 56 483 Miscellaneous Gene Families AT2G18540 30.684 2.43e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01217 - - vra:106755871 888.641