Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01215 ATGCTTAAAAATCAAAGTATGTTCTCTCTGACAAGAAATTGCTTCAAGTATCGTACTACCTACTTCAGGAGGAATATCCCAAGTGAAACCATACGCTCCACACTCTCATTTTGCCACAAATTTCATGACCCCAATGAGAAATATTTACTCAGGATTGTTTTTTCTCATCACACCCACAAATTTGAGCGCTCTTCATTCCAAATCAACAGTAGTTGCACTCAATTCCCTGTCCCATTTGCACCCTTTAGTTCTCCCTATTCAACAAAAGCTCCTTCAAGATCTTACCGAAGACGAGCCAGAAATAGGTTGTTGAAGTCCTCCAAGCCTACCCTAGACCAAGCCCAATTTCAGTTGGCACTGTCCCAACTTCCCCCAAGGTTCACTACTGAAGAACTGTGCTCTGTGATTGCTCAACAAGATAATCCCTTGGTTTGCTTAGAACTTTTTCACTGGGCATCTCAACAGCCACGATTTCGGCACGATGTGTCCACGTTTCATATCACCATAAAGAAGCTTGGTACGGCAAAGATGTTCCAAGAAATGGATGACATTGTGAACCAACTGATTGCAGTTCCTTTAATTGGTTCAGAGGCATTGTTCAACACAGTTATATATTATTTCACTCAGGCACGGAAGCTTACTAGAGCTGTCAATGTGTTTAAGCACATGAAAAGTAAAAGGAACTTAATTTGCTGTTATAGGCCCTCTATTAGAACCTATAATATTCTTTTTGCTGCATTTTTGGGTAGAGGAAGCAACTCCTATATAAACCATGTGTATATGGAAACAATTAGATGTCTGTTTAGGCAAATGGTCAATGATGGGATCAAGCCTGATATTTTTTCATTGAATTCTATGATCAAAGGTTATGTGCTATCTCTTCATGTTAATGATGCATTGAGGATATTTCATCAAATGGGTGTGGTTTATGATTGTCAGCCCAATGCGTTGACATATGATTACTTGATTCATGGCTTGTGTGCCCAGGGCAGAACAAATAATGCCAAAGAGTTATTTAATGAAATGAAGACCAAAGGTTTTGTTCCTGGTGGTAAATCTTATAACTCGCTTGTCAACTCGTTGGCGCTTGGTGGAGAGATTGGTGAAGCAGTAAATTATCTGTGGGAGATGACCAATAAGCAAAGGTCACCTGATTTTATTACATTTAGGACTGTACTGGATGAGATATGCAGACAAAGAACAATTCAGGAGGGCATGCGTTTTTTGCAGGAGTTGCAAGAAAATGACCTTGTAGATGGGCATGCTTACAGGAAGCTTCTTTATGTGCTTGAAGATGACTATGGGAATTCAGTAGGTAGAAACAATGGAATTGAGTGA 1338 0.3976 MLKNQSMFSLTRNCFKYRTTYFRRNIPSETIRSTLSFCHKFHDPNEKYLLRIVFSHHTHKFERSSFQINSSCTQFPVPFAPFSSPYSTKAPSRSYRRRARNRLLKSSKPTLDQAQFQLALSQLPPRFTTEELCSVIAQQDNPLVCLELFHWASQQPRFRHDVSTFHITIKKLGTAKMFQEMDDIVNQLIAVPLIGSEALFNTVIYYFTQARKLTRAVNVFKHMKSKRNLICCYRPSIRTYNILFAAFLGRGSNSYINHVYMETIRCLFRQMVNDGIKPDIFSLNSMIKGYVLSLHVNDALRIFHQMGVVYDCQPNALTYDYLIHGLCAQGRTNNAKELFNEMKTKGFVPGGKSYNSLVNSLALGGEIGEAVNYLWEMTNKQRSPDFITFRTVLDEICRQRTIQEGMRFLQELQENDLVDGHAYRKLLYVLEDDYGNSVGRNNGIE 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01215 445 PANTHER ATPASE EXPRESSION PROTEIN 3 68 428 - -
Vian5g01215 445 Pfam PPR repeat family 314 362 IPR002885 -
Vian5g01215 445 Pfam PPR repeat 282 306 IPR002885 -
Vian5g01215 445 Pfam Pentatricopeptide repeat domain 200 247 IPR002885 -
Vian5g01215 445 NCBIfam pentatricopeptide repeat 282 316 IPR002885 -
Vian5g01215 445 NCBIfam pentatricopeptide repeat 318 349 IPR002885 -
Vian5g01215 445 Gene3D Tetratricopeptide repeat domain 294 442 IPR011990 GO:0005515
Vian5g01215 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Vian5g01215 445 Gene3D Tetratricopeptide repeat domain 97 254 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01215 Vian-Chr5 34670820 34672157 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01215 178 427 Glycosyltransferase AT1G05670 24.314 1.25e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01215 - - var:108340576 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01215 5 34670820 34672157 Vian5g01215 5 34670820 34672157 ECH