Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01186 ATGATAAAGAAAATACGTTTGGCTTGTTCCTTGAAGGAGGATGAAGAGAAAGGGAATAATAGCTTTGTGGAATTGGATACAAGGGTAGGAGGTAATGATGGTTTTCCTAGAATTGGACCAAATGATTCGCTTCTCCCTGGTCTTTTTGATGATGTTGCGCTAAACTGTCTTGCTTGGGTTAGTAGATCTGATTATGCTTCACTAGCGTGTATAAATAAAAGGTACAACATGTTGATTAAGAGTGGATATCTATCCGGGTTGAGGAAGAAGTTGGGGATTGTGGAGCTAGAGCATTTGGTTTATTTGGTTTGTGATCCAAGAGGGTGGGAGGCATTTGACCCCAAGAGAAATAGATGGATAACATTACCTAAAATACCTTGTGATGAGTGTTTTAATCATGCAGACAAGGAGTCCTTGGCTGTGGGGAGTGAATTGTTGGTGTTTGGTCGGGAATTGATGGATTTTGCCATTTGGAAGTTCAGCTTGATTTGCCGTGGTTGGGTGAAGTGTCAGGAGATGAACCGTCCTCGGTGCTTGTTCGCATCTGGCAGTCTTGGTTCAATTGCTATTGTTGCTGGTGGAAGTGATAAATATGGAAATGTTCTTGAATCTGCTGAGTTGTATGACTCTTCTTCAGGTACATGGGAACTGTTGCCGAACATGCACACACCACGTAGATTGTGCTCTGGTTTTTTCATGGATGACAAGTTCTATGTGATCGGTGGCATGTCAAGTCCTACTGTTTCATTGACTTGTGGGGAGGAGTATGATCTGAAGACAAGAAACTGGCGGAAAATAGAGGGTATGTATCCATATGTTAATGGGGCTGCTCAGGCTCCTCCACTTGTGGCAGTTGTGGATAATGAGTTATACGCAGTTGAGCATCTTACCAACATGGTGAAGAAATATGACAAGGAAAATAACAGTTGGAGTGAATTGGGAAGACTTCCAGTTCGGGCCGATTCTTCAAATGGATGGGGCCTGGCTTTCAAGGCTTGTGCAGAGAAGCTTCTGGTTGTGGGTGGGCAAAGGGGTCCAGAAGGTGAAGCTGTTGTACTGAATTCATGGTGTCCTAGGACAGGGGTCAGGAGTGGAACCATAGATTGGCAAGTACTTGGTGTTAAGGAGCATGTTGGGGTGTTTGTTTACAATTGTGCTGTTATGGGATGGTCTGGTGAGATGCTTCTTGATTGA 1194 0.4389 MIKKIRLACSLKEDEEKGNNSFVELDTRVGGNDGFPRIGPNDSLLPGLFDDVALNCLAWVSRSDYASLACINKRYNMLIKSGYLSGLRKKLGIVELEHLVYLVCDPRGWEAFDPKRNRWITLPKIPCDECFNHADKESLAVGSELLVFGRELMDFAIWKFSLICRGWVKCQEMNRPRCLFASGSLGSIAIVAGGSDKYGNVLESAELYDSSSGTWELLPNMHTPRRLCSGFFMDDKFYVIGGMSSPTVSLTCGEEYDLKTRNWRKIEGMYPYVNGAAQAPPLVAVVDNELYAVEHLTNMVKKYDKENNSWSELGRLPVRADSSNGWGLAFKACAEKLLVVGGQRGPEGEAVVLNSWCPRTGVRSGTIDWQVLGVKEHVGVFVYNCAVMGWSGEMLLD 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01186 397 FunFam F-box/kelch-repeat protein SKIP11 90 374 - -
Vian5g01186 397 Pfam Kelch motif 176 221 IPR006652 GO:0005515
Vian5g01186 397 Pfam Kelch motif 224 269 IPR006652 GO:0005515
Vian5g01186 397 SMART kelc_smart 236 288 IPR006652 GO:0005515
Vian5g01186 397 SMART kelc_smart 188 235 IPR006652 GO:0005515
Vian5g01186 397 SUPERFAMILY F-box domain 43 131 IPR036047 GO:0005515
Vian5g01186 397 SUPERFAMILY Kelch motif 108 347 IPR015915 GO:0005515
Vian5g01186 397 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 42 389 - -
Vian5g01186 397 Gene3D - 100 375 IPR015915 GO:0005515
Vian5g01186 397 CDD F-box_AtAFR-like 44 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01186 Vian-Chr5 34376278 34377471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01186 48 267 Miscellaneous Gene Families AT4G33900 26.549 3.20e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01186 - - gmx:100792139 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01186 5 34376278 34377471 Vian5g01186 5 34376278 34377471 ECH