Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01185 ATGGCTCAGGGGAAGATAATTGCACAAGAAGTAAGGAAAATGGTGACATGGAACAGAATTGAGAAGAGGGACATCATAAGTACCATGCCAAATGAGATCCTTGCAAATGTTCTGTCTCGGTTGACATTGAAAGAAGCTGCTAGAACTAGCGTGTTGTCAACTACATGGAGATATCAATGGACCTATTTCTCTGGGGACTTGGACTTTGATAATTCTCTCAGGACTCTTCTCTTGCGCCATGAGCCTGTTGGACTTTTGACCAAGTGCAAAGTTTTTATTCGTGAGTGGGAGAGCTTCATGAGCCGTTTGCAACATGTGATGAAATCGCTGAAATGCCACTCCATGCATGGACTCAGAATCTGCATGGATTTGGGCAACCCTTGGAAGGTGACTGAGTGGATGAAGTTTGCTGCAGAGAAGAATGTTGAAACCTTGGACCTGGACTTTTCATACAATTTCATGGAACCATTCATTGAAATAAGTGAGAACATTCGAAATGTGTTGTCAAAGAGTTTTGAAATGAGGGCACTGAGAGTCCTGCGTTTGGCTTCTGTGGACGTGAGTGCTGAGATCATTGAGAGTTTTCTAGCATCTTGTCCAGTGCTTGAAACATTATGTGTCAGAGGATCAAAAACCGTTGAGAGCTTGAAAGTTAAGGGTCAAGGACTGAGGTTGAAGCATTTGGAATTGGTTGAATGCCATATTTTGCATCTTGATATCTGTGCTGAAAATCTCATGACATTTACGTACACTGGAGATTATGGAAATTTTAACTTTGAAAATGTTCCAAACCTTGTGGAAGCCTCCTTTGGAGGAAAATGTTGTAATTACCTGCTATCGAACATGCAAGATGTTGAACTTTATGCAGTACTTTCGCAGGTTCAAGTTCTGAAATTGGAACTGTTTATACTTTATGGGGGAGTTCTTGAAAATCTTCCTGTGTTAAGTAATGTGAAGAACCTGGAACTACGAATTCGTCACAGGTGTGGAGGGGAACTTAGTCGTACTGTTTCATTACTGAGTGCATTCCCTTCAATAGCTGTGCTTAAGATTAAGTTCATGAGGACCACTATCTGGGAATTGGATGAGGGGTGGAAGGCCAATCTGAAGCATGAGTATCCAAACCTGAGGGAGCTGGAAGTGTCTGGGTACAGAAGAGACTCCTGTCAAATTGAGTTGCTGATCAGCATATTTAAAAAGGCACCAAATCTCAACAGGATTGTTGTGGATCCCTTGGCTTCAATGCATGTGCAAAGATCACCTGATGTCAAGGCCAGCATTAGAGAAACGCAACGTGATATGACCATATGGTATGTTGATGCTCTCAAACCTTATGTGTCTCCTTCAACTCAGTTGATTGTCCTCTAA 1368 0.4203 MAQGKIIAQEVRKMVTWNRIEKRDIISTMPNEILANVLSRLTLKEAARTSVLSTTWRYQWTYFSGDLDFDNSLRTLLLRHEPVGLLTKCKVFIREWESFMSRLQHVMKSLKCHSMHGLRICMDLGNPWKVTEWMKFAAEKNVETLDLDFSYNFMEPFIEISENIRNVLSKSFEMRALRVLRLASVDVSAEIIESFLASCPVLETLCVRGSKTVESLKVKGQGLRLKHLELVECHILHLDICAENLMTFTYTGDYGNFNFENVPNLVEASFGGKCCNYLLSNMQDVELYAVLSQVQVLKLELFILYGGVLENLPVLSNVKNLELRIRHRCGGELSRTVSLLSAFPSIAVLKIKFMRTTIWELDEGWKANLKHEYPNLRELEVSGYRRDSCQIELLISIFKKAPNLNRIVVDPLASMHVQRSPDVKASIRETQRDMTIWYVDALKPYVSPSTQLIVL 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01185 455 Gene3D Ribonuclease Inhibitor 86 426 IPR032675 -
Vian5g01185 455 Gene3D - 8 61 - -
Vian5g01185 455 Pfam F-box domain 26 58 IPR001810 GO:0005515
Vian5g01185 455 SUPERFAMILY RNI-like 133 408 - -
Vian5g01185 455 PANTHER F-BOX PROTEIN-LIKE 24 413 - -
Vian5g01185 455 SUPERFAMILY F-box domain 22 62 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01185 Vian-Chr5 34372434 34374172 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01185 24 205 EF-hand Containing Proteins AT5G41840 24.155 4.82e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01185 - - gmx:100778140 568.926