Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01170 ATGTACAAAAACCAGCTTCAGGAGCTGGCACAGCGAAGCTGCTTCAACCTGCCTTCCTACACGTGCATTCGGGAAGGTCCTGATCACGCGCCGCGTTTCAAGGCCACGGTTAACTTCAACGGCGAGATCTTCGAGAGTCCTCAATACTGCTCCACGCTCCGTCAGGCGGAGCACTCCGCCGCCGAGGTCGCGCTCAATTCGCTCTCCAACCGTGCTCCCTCTCACTCCCTCGCCGCCAGGATCCTCGATGAAACGGGAGTGTACAAGAACCTTCTGCAGGAAATTGCTCAGAGGGTAGCGGCGCCATTGCCGCAGTACTTTACGTTCAGGTCAGGATTAGGACATCTTCCTGTGTTTACTGGGACAGTGGAGTTAGCTGGAATTATGTTTACTGGTGAACCTGCTAAGAACAAGAAACAAGCGGAGAAAAATGCGGCTATGGCGGCTTGGTCTTCTCTAAAGCAATTGGCAAAAGAAACTGCAAGGTCTTCAACTGAACCTGAGAACAACGACGAACTGGAACAGATCACTATAGCACGGGCTTTGCGAAACTACCGTCTGAAGGAAAAGATTTCAATGTCAAATCCAAATGCGCCTATTCCATTTCCAAAGAAGTTTCAAATTCAAAATCCCAGACCAACCAGTCCTCAGCCTCCTCCTGCTGCTACATCAAAGATTCTTCCCTTAATATGCCAAAAGGCAGCTTCTCGAAGCAGGCATCCTGTCGCAGCATCGCCAGCACCAGCAGTCAGTGACAATTCTGCTATGCCACAACTCTCTGCCACATCAGATAGCCGAAGAATTCGTCGCCCTAAGTTCCCTGCTGCTGGAGCAGCACCTTATGTTCCCATTAGACAGATGAGACCACCTTGCCAGGGAATGGCACCTCCGGTGACGATAAGGACTTCTATACCTGTATTCTCTCCACCACCGCCAACAGCTGCCACAATGTCTCTTCCAGTACTACGAGCTCCTCCTGTACGAGTTGCTCCTCCTGTTACTATTAGGCAAGCTGTTCCAGTATTTGCGGCTCCACCTGTAAGAATAGACGAACCTGTTCCCAGCCTTACCAGCCTAGAACCCGTTCCTACCCGAAAAGACGATGCTCCAACTATTAGTTCCCCCAGCCTGGAAGACAAACTACCAGTTAAAACTCCAGAGACAGAGATGAAGACTGAGAAAATTTCAGCTGAATCTGAGACAGTGCAGAGCTTGGCACAGCTGAAAATTTGA 1233 0.5036 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAAEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVAAPLPQYFTFRSGLGHLPVFTGTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIARALRNYRLKEKISMSNPNAPIPFPKKFQIQNPRPTSPQPPPAATSKILPLICQKAASRSRHPVAASPAPAVSDNSAMPQLSATSDSRRIRRPKFPAAGAAPYVPIRQMRPPCQGMAPPVTIRTSIPVFSPPPPTAATMSLPVLRAPPVRVAPPVTIRQAVPVFAAPPVRIDEPVPSLTSLEPVPTRKDDAPTISSPSLEDKLPVKTPETEMKTEKISAESETVQSLAQLKI 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01170 410 MobiDBLite consensus disorder prediction 353 410 - -
Vian5g01170 410 PANTHER - 1 346 - -
Vian5g01170 410 Gene3D - 2 83 - -
Vian5g01170 410 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Vian5g01170 410 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Vian5g01170 410 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Vian5g01170 410 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Vian5g01170 410 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Vian5g01170 410 MobiDBLite consensus disorder prediction 194 223 - -
Vian5g01170 410 FunFam Double-stranded RNA-binding protein 2 84 155 - -
Vian5g01170 410 Gene3D - 84 155 - -
Vian5g01170 410 SMART DRBM_3 2 69 IPR014720 -
Vian5g01170 410 SMART DRBM_3 88 154 IPR014720 -
Vian5g01170 410 SUPERFAMILY dsRNA-binding domain-like 88 159 - -
Vian5g01170 410 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Vian5g01170 410 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Vian5g01170 410 FunFam Double-stranded RNA-binding protein 2 1 70 - -
Vian5g01170 410 MobiDBLite consensus disorder prediction 382 396 - -
Vian5g01170 410 MobiDBLite consensus disorder prediction 237 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01170 Vian-Chr5 34198164 34201464 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01170 - - gmx:100816445 672.544