Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01160 ATGGCCGGCAAAGGTGGAGCTGCTCCGGCGACATACTCGCCATCTCTGACAGCCGATAAAAAGAAACCACCGTTTTTCAAGGAAGATTGGGTTCGGCCCGATGGCCGAGGTTTCCACCAGTGCAGACCTGCATTTTTCAGGACTGGTGCTGTGAATGCAGCATCTGGATCTGCATATGCTGAGTTTGGAAATACCAAGGTCATTGTATCTGTATTTGGGCCAAGAGAGAGCAAGAAGGCAATGATGTACAGTGATATAGGGCGCTTGAATTGCAATGTGAGCTTTACAACGTTTGCAACTCCAGTACGAGGGCAGGGTTCAGACCACAAAGAGTACAGTGCGATGCTTAATAAAGCTCTGGAAGGTGCAATAATACTGGAAAGTTTCCCCAAGACAACTGTGGATGTTTTTGCATTGGTGCTAGAATCTAGCGGCAGTAATAATATTATTGAACATGTTGCAGGTGATCTCCCAGTTGTCATATCCTGTGCTAGCCTTGCCCTGGCTGATGCTGGAATAATGATGTATGATCTTGTTGCCTCGGTTTCTGTGTCAAGTTTTAGTAAGAACCTTGTGATTGATCCTATTTTGGAGGAGGAAAACTGCCAAGATGGTAGCTTAACGATTACATGCATGCCCTCTCGCTATGAAATCACCCAACTCACCGTTACCGGGGAATGGTCTTCCCCGAAGATCAACGAGGGAATGCAGCTGTGCTTGGATGCTTGTGCAAAGCTAGCGAAGATTATGAGATCATGCTTGAAAGAAGCTGCTTCTGATTCCAGGGAGTAG 792 0.4659 MAGKGGAAPATYSPSLTADKKKPPFFKEDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSFTTFATPVRGQGSDHKEYSAMLNKALEGAIILESFPKTTVDVFALVLESSGSNNIIEHVAGDLPVVISCASLALADAGIMMYDLVASVSVSSFSKNLVIDPILEEENCQDGSLTITCMPSRYEITQLTVTGEWSSPKINEGMQLCLDACAKLAKIMRSCLKEAASDSRE 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01160 263 CDD RNase_PH_MTR3 41 256 - -
Vian5g01160 263 PANTHER EXOSOME COMPLEX COMPONENT 32 254 - -
Vian5g01160 263 Pfam 3' exoribonuclease family, domain 1 40 173 IPR001247 -
Vian5g01160 263 SUPERFAMILY Ribonuclease PH domain 2-like 175 259 IPR036345 -
Vian5g01160 263 MobiDBLite consensus disorder prediction 1 20 - -
Vian5g01160 263 SUPERFAMILY Ribosomal protein S5 domain 2-like 28 204 IPR020568 -
Vian5g01160 263 Gene3D - 19 262 IPR027408 -
Vian5g01160 263 Pfam 3' exoribonuclease family, domain 2 177 237 IPR015847 -
Vian5g01160 263 FunFam Exosome complex component RRP41-like 11 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01160 Vian-Chr5 34050882 34055365 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01160 K12587 - gmx:100819105 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01160 5 34050882 34055365 Vian5g01160 5 34050882 34055365 ECH