Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01106 ATGGCACTCCCACACTCCATCTCTGCGTTATCAACCACACTCACGCTTTCCTCCTCAGTGAGCAAACTCACCACCAATAAACTGAATTCCTTTCCCTTCTTCTCGAACAAGGGTACGCAATTTTTCACGAAACAAACTCGACCCAGAAGCGGAAGAAGCCCTTTGCTTACCCCTGCACGCGTTGCGGCGCCACCCTCAACGGCTGAAACCGATCAGTTGTTCCCTGAAACCGAAAAGGAGGAGACTGAGGAAGAGTTTAACGAGGAGAGCTCTTCCTCTAAGTTCACCTGGAGGGATCACTGGTACCCTGTTTCGTTAATTGAGGATCTGAACCCTCTCTTACCCACACCGTTTCAGCTTCTGGGTCGTGAAATCGTGCTCTGGTACGACAAGTCCACTTCCCAATGGGTTGCTTTTGATGACAAATGCCCCCATCGTCTTGCCCCTTTATCTGAAGGAAGGATTGATGAAGATGGGAAGTTGCAGTGTTCTTACCATGGGTGGTCTTTTGATGGTTGTGGATCTTGTGTTAAGATTCCTCAGGCTGCATCCGAAGGTCCAGAAGCACGTGCTCTTCGATCTCCTAAAGCGTGTGCCACTAGGTTCCCTACTTTAGTGTCTCAGGGATTGCTCTTTGTTTGGCCTGATGAAAATGGTTGGGAGAAAGCAAGTGCCTCCAAGCCTCCAATGTTGCCTGATGACTATGAAAACCCGGAGTTTGCCACTGTGAATATTCAGCGTGACCTGTTCTATGGTTACGATACTCTAATGGAGAATGTCTCTGATCCTTCTCACATTGATTTTGCTCATCACAAGGTCACAGGAAGGAGGGACAGAGCCAAGCCTCTGCCATTCAAGATGGATGCTCGTGGTTCATGGGGCTTTTCTGGAGCGAATGAAGGGAACCCTAAAATCAGTGCTAAATTTGTTGCGCCTTGTTATTATATGAACAAGATTGAGATTGATACCAAACTCCCTGTAGTTGGTGATCAGAAATGGGTTGTATGGATATGTTCCTTCAATGTCCCCATGGCACCTGGTAAGACTCGCTCCATAGTTTGCAGTGCTCGAAACTTCTTCCAGTTCACAGTGCCAGGGCCTGCCTGGTGGCAAGTAGTTCCTAGATGGTATGAGCATTGGACTTCGAACAAGGTATATGATGGGGACATGATAGTTCTTCAAGGGCAAGAGAAAATCTTCCTTTCACAAACCAAGGAAGGAGGCGACATTAACAAACAGTACACCAGCATCACCTTCACACCAACACAGGCAGATCGCTTTGTCTTGGCATTTCGAAACTGGCTGAGGCGACATGGCAATGGCCAACCAGAATGGTTTGCCAACATCAGCAACCTGCCATTGCCATCAACAGTTTTATCCAAACGTGAGATGATGGATAGATTTGAACAGCATACTCTGAAGTGTTCATCATGTAAAGGAGCTTACGAGGGATTCCAAATATGGCAGAAAGTCCTAATTGGTGCAACAGTTATGTTTTGTGCAACATCAGGGATCCCAGCAGATGTCCAGTTTCGTGTTCTTTTGGCAGGACTTGCAATTGTCAGCGCTGCCTTAGCTTTTACCCTAAACCAGCTCCAAAAGAATTTTGAATTTGTCGATTACGTTCATGCAGAAATCGAATAA 1644 0.4672 MALPHSISALSTTLTLSSSVSKLTTNKLNSFPFFSNKGTQFFTKQTRPRSGRSPLLTPARVAAPPSTAETDQLFPETEKEETEEEFNEESSSSKFTWRDHWYPVSLIEDLNPLLPTPFQLLGREIVLWYDKSTSQWVAFDDKCPHRLAPLSEGRIDEDGKLQCSYHGWSFDGCGSCVKIPQAASEGPEARALRSPKACATRFPTLVSQGLLFVWPDENGWEKASASKPPMLPDDYENPEFATVNIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKMDARGSWGFSGANEGNPKISAKFVAPCYYMNKIEIDTKLPVVGDQKWVVWICSFNVPMAPGKTRSIVCSARNFFQFTVPGPAWWQVVPRWYEHWTSNKVYDGDMIVLQGQEKIFLSQTKEGGDINKQYTSITFTPTQADRFVLAFRNWLRRHGNGQPEWFANISNLPLPSTVLSKREMMDRFEQHTLKCSSCKGAYEGFQIWQKVLIGATVMFCATSGIPADVQFRVLLAGLAIVSAALAFTLNQLQKNFEFVDYVHAEIE 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01106 547 Pfam Rieske [2Fe-2S] domain 100 183 IPR017941 GO:0051537
Vian5g01106 547 Gene3D - 96 238 IPR036922 GO:0051537
Vian5g01106 547 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 37 493 - -
Vian5g01106 547 Pfam Pheophorbide a oxygenase 309 404 IPR013626 GO:0010277
Vian5g01106 547 SUPERFAMILY ISP domain 94 219 IPR036922 GO:0051537
Vian5g01106 547 CDD Rieske_RO_Alpha_PaO 95 224 - -
Vian5g01106 547 Gene3D - 239 442 - -
Vian5g01106 547 SUPERFAMILY Bet v1-like 208 442 - -
Vian5g01106 547 MobiDBLite consensus disorder prediction 44 90 - -
Vian5g01106 547 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 101 213 IPR017941 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01106 Vian-Chr5 33066539 33070546 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01106 K13071 - gmx:100812162 1001.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01106 5 33066539 33070546 Vian5g01106 5 33066539 33070546 ECH