Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01101 ATGGCTCCAAAACGTGGTGAGAAGTTGGTGGTGAGATCCACCAAGAAAGTTGTGGAATCAAGCGTGCAAGTATCGGTTGTAAGCACCGGCAGCAGAAGACAAACACGGGGAAACAAAGAAACAGAAGAGGCAGAAGGTGGAAAAGAGCATGTGATGGTCATTCCCGTTGAAGAAGTGAATCCTGAAGCCCGGAAGGATTCGTCTACCTCTGCCATTACTGAGGGAAACAAAGGTGAGAAAAACAACACTGGGGAAGATGGTGGAGTGCAGATTGAAGAGAAAGAGAATAAGGTAGAGAACGAGGGAGAGAAGGATGAGAAGGAGAAGGAGAAGGCAAAGATACCGTCTAATGGAAAAGAGAGAAAAAAGGGGAAAAAGAAGGGAAGGAAAAGTGTAGAAGGGTATCAGAGGTATGTGTATAGGGTGTTGAAGCAGGTGCACCCTGAGATGGGAATATCTGCCAAATGCATGACTGTTCTGAACAATTTGATGAATGACATGTTTGAGAGATTGGCTGGTGAAGCTGCTAAGCTGAAGGACTACACTGGACACATGACATTGTCTTCAAGGGAGATTCAAGGAGCAGTGAAGCTGGTTTTACCAGGAGAGCTTGGGAAGCATGCCATTGCAGAAGGTGTCAAAGCTGTGAATAAATTCACCTCCTATGATACCGATGAATAG 681 0.4552 MAPKRGEKLVVRSTKKVVESSVQVSVVSTGSRRQTRGNKETEEAEGGKEHVMVIPVEEVNPEARKDSSTSAITEGNKGEKNNTGEDGGVQIEEKENKVENEGEKDEKEKEKAKIPSNGKERKKGKKKGRKSVEGYQRYVYRVLKQVHPEMGISAKCMTVLNNLMNDMFERLAGEAAKLKDYTGHMTLSSREIQGAVKLVLPGELGKHAIAEGVKAVNKFTSYDTDE 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01101 226 Pfam Core histone H2A/H2B/H3/H4 85 198 IPR007125 GO:0003677
Vian5g01101 226 Coils Coil 91 111 - -
Vian5g01101 226 PRINTS Histone H2B signature 206 219 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vian5g01101 226 PRINTS Histone H2B signature 176 193 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vian5g01101 226 PRINTS Histone H2B signature 135 153 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vian5g01101 226 PRINTS Histone H2B signature 193 206 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vian5g01101 226 PRINTS Histone H2B signature 154 174 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vian5g01101 226 SMART h2b3 125 221 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vian5g01101 226 MobiDBLite consensus disorder prediction 16 34 - -
Vian5g01101 226 MobiDBLite consensus disorder prediction 1 130 - -
Vian5g01101 226 MobiDBLite consensus disorder prediction 86 117 - -
Vian5g01101 226 SUPERFAMILY Histone-fold 107 221 IPR009072 GO:0046982
Vian5g01101 226 PANTHER HISTONE H2B 108 221 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vian5g01101 226 FunFam Histone H2B 94 222 - -
Vian5g01101 226 Gene3D Histone, subunit A 91 222 IPR009072 GO:0046982
Vian5g01101 226 MobiDBLite consensus disorder prediction 35 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01101 Vian-Chr5 33007214 33007894 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01101 K11252 - gmx:100786873 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01101 5 33007214 33007894 Vian5g01101 5 33007214 33007894 ECH