Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00999 ATGGCAAGAGTCAACTCAGCTGCTGCCACTGTCAGAAGGCTTGAGGGGAAAGTGGCGATTATCACTGGTGGTGCCAGCGGCATAGGTGAGGCCACCGCAAGACTCTTCTCTAAGCACGGAGCTCATGTGGTGATAGCTGATATTCAAGACGATTTGGGTCTTTCTCTCTGCAATGAGTTGGAATCAGCTATCTATGTTCATTGTGACGTGACAAAGGAAGAAGACGTCGAAAACTGCGTCAACGTAGCTGTTTCCAAGTACGAGAAGCTGGACATCATGGTTAATAACGCGGGTCAATTGAATGAGTTCAAACGAAGCATTCTGGAAAACACAAAGTCTGAGTTTGAGAGAGTGATAAGAGTGAACATGGTTGGCCCATTTCTGGGAACAAAGCACGCTGCAAGAGTGATGATTCCTGCTAAAAGGGGTTGCATAATTAACACAGCTAGTGTTGCAGGATGCATAGGTGGAGGTGCTACACATGCCTACACCAGTTCAAAGCATGGGCTTATGGGGCTGATGAAAAACACTGCGGTGGAGCTTGGACAATTCGGTATTCGGGTGAACTGTGTATCCCCTTATCTGGTTGCGACACCGATGTTAAATGAGTATTTCAATATTGATGAAGAAGGAGTTCGTGAGGCTTATTCCAACCTAAAAGGTTCTTATCTTGTGACCAACGATGTGGCCGAAGCTGTTGTTTATTTGGCAGGTGATGAGTCTAAGTATGTTAGTGGTCACAATCTTGTGTTAGATGGAGGATTCTCCATTACAAATGCAGGATTTTCTCCTTGGCAGTCTGTGTGA 807 0.456 MARVNSAAATVRRLEGKVAIITGGASGIGEATARLFSKHGAHVVIADIQDDLGLSLCNELESAIYVHCDVTKEEDVENCVNVAVSKYEKLDIMVNNAGQLNEFKRSILENTKSEFERVIRVNMVGPFLGTKHAARVMIPAKRGCIINTASVAGCIGGGATHAYTSSKHGLMGLMKNTAVELGQFGIRVNCVSPYLVATPMLNEYFNIDEEGVREAYSNLKGSYLVTNDVAEAVVYLAGDESKYVSGHNLVLDGGFSITNAGFSPWQSV 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00999 268 FunFam Short-chain dehydrogenase reductase 2 260 - -
Vian5g00999 268 CDD secoisolariciresinol-DH_like_SDR_c 13 256 IPR045309 GO:0016616
Vian5g00999 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Vian5g00999 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 IPR002347 -
Vian5g00999 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 IPR002347 -
Vian5g00999 268 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 257 IPR036291 -
Vian5g00999 268 Gene3D - 3 264 - -
Vian5g00999 268 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Vian5g00999 268 PRINTS Glucose/ribitol dehydrogenase family signature 137 153 IPR002347 -
Vian5g00999 268 PRINTS Glucose/ribitol dehydrogenase family signature 219 239 IPR002347 -
Vian5g00999 268 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Vian5g00999 268 PRINTS Glucose/ribitol dehydrogenase family signature 163 182 IPR002347 -
Vian5g00999 268 PRINTS Glucose/ribitol dehydrogenase family signature 184 201 IPR002347 -
Vian5g00999 268 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 150 178 IPR020904 GO:0016491
Vian5g00999 268 Pfam Enoyl-(Acyl carrier protein) reductase 23 256 - -
Vian5g00999 268 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 9 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00999 Vian-Chr5 31500063 31500955 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00999 14 257 Acyl Lipid Metabolism Gene Families AT1G63380 31.395 8.23e-30 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00999 - - gmx:100787995 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00999 5 31500063 31500955 Vian5g00999 5 31500063 31500955 ECH