Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00987 ATGGGAGTGCCCGCGTTCTATAGATGGCTGACTGATAAATATCCCAGGGTGGTGCAAGATGTAGACAAAGCCATGCAAGACCCAAATGGAGTGAAATATGATAACTTGTATCTTGACATGAATGCCATCATCCATCCATGTTTTCACCCTGATAGTGATCATGACGATATTCCACTTCCAACAACATTCGAAGATGTTTTCAGAAATGTCTTTGACTACATTGATAGACTTGTCGACACTGTTAGGCCTCGCAAGCTCGTATACATGGCTATTGACGGGATTACCCCACGTGCCAAAATGAACCAGCAACGTTCAAGACGATTCCGAGCTGCTAAGGACAAAGAAATTCATGAAGCTGAGGAAGAGAGGCTAAGGAAACAATTTGAAATGGAAGGGAAACAAGTTCTTCCTAAACAAGAGTCTGAAGTTGCAGATTTCAATATTATAACACCAGGCACTGAGTTCATGCATGAACTCTCAAAGGCACTTAAGGGCTATATCTCTACAAGGATAAATTGTAACTCATTATGGAAGGATATTATGGTAATTCTCTCCGATGCTAATGTTCCCGGGGAAGGGGAACATAAGATTATGTCATACATACGCAAACAGCGTACTCTGGAGGAGTATGATCCAAATACCTGTCACTGTTTATATGGCTTGGATGTCTCTTTTCAGCAGCAACCAAAAGTAGCTGCCAAGCCTTTCAAGCTTTTGCACATTTGGCTACTGAGGGAGTATATTGAGTTAGACATGAAGATAGAAAATCCTCCAAAAACTTGTAGCATTATTAAGCTTGAGAGAATAATTGATGATTTCATCTTCATGTGCTTTTTTGCTGGAAATGATTTTCTGCCCCACCTGCCATCTTTGGATATTCATGAGGGGGCCATTGATTTGCTAATGACTGTTTACAAGGAAGAATTCAGTACTCTTGGAGGACATCTAGTGGACATGAGCAGGGTTGGAGAAAAAAATGCTGCTTTTATGAAGTTATCTAGAGTTGAAAACTTTATACTTAAGGTTGGTACATATGAAGAGAAAATGTTTAAGAAAAGATCTGAAATACGAGAACGCAGATTGAAAAGGCTTATTCGAGATAATGAGGATGCCAGGAGGGAAGAAAAGAATGAAAAATGTTTCTTTGATCTTGACGATGAAAATACTTCTGATTGCACTCTTCTGATCAAGAAGGCACCAGATTCAAAGTTGTCTCTTTTGGCGAATAATGTTTCTGCTACACATGCTGAAATTGAGCAAAACACAAAGGATTTAAAAGATGAATTGAAGAAAAGTATTAGACAAAAATGTGACTTACTTTTGAGTGAAGATTTCTTAGTTGACAAGATAAAATTTGGAGCACCTGGTTACAAAGAAAGATATTATAAAGCGAAGTTTTCTGTGGAAACTCCTACTGACATTGAGGGAAAAAGGAAGGAAATAGGTCCCTTTTGCTATTCAACTTTCAATGTTGGTGGTGGTGGTGATAGATTGCAATTTATTTGTAGGTCCAGAAGTACACTGAAGGATTGGCATGGGTTTTATCCGTTCCACTACGGTCCATTTGCTTCAGATTTAAAGGGCATGAGTCAAGTGAGAGTAAAATTTGAAAAAGGTGTCCCATTCTTACCACTTGATCAACTTTTAAGTGTTCTCCCTCCAGGAAGTGCTCATGCTCTTCCAAAAGCCTATGCACAACTAATGCTAGATGAGAAATCTAGAATCCTTGACTTTTATCCTCAGGATTTTGAAGTTGACACTGAAGGAAAACGCTTCACCTGGCAGGGAATTTGCAAACTTCCATGGATAGATGATACCCGGCTTGTGGCTGAAACCAAAGAACTCAAAAATGAATTATCGGAAAAGGAGGCCATAAGAAATTCACTCAAGGCTGATAGCTTGTTTGTTAGAAGCTCTAGCAAATTAGCAGAGAAATTTGGCTCTCTATCTGTTGACCCAAATTGCAAGATAGACACGAGAATAAGCAGTGATGGCATTGGGGGTACCATAAGTCCTTGCAATGAAGAAGCTTGCTTGGACCTTTGTGACAACAAAGAAGATCGTGTCTTATGTGTCTATTACGAGCTTCCTGCTGGTAGTAATCACATTCCTTGTTTACTATCGAATGTGAGCCTTCCAGAGAAGAAAATCTTTGAAGGTGATATCATGGAAACTGAACTCTGGCATGAACGTCAGAGATATTTTAGTCGTTTTGAGAGGGTGCAAACTCAAGACAAATGGAGGAGTGAAAACAAGAGCAATAGTTCAAGGGTTTTCTCACATTCAAGTAGACAACATGAAAGAAGCTTTTCATCAAATGGAAGTAGCCAACATGCAAGAAGCTTTTCATCAAATGCAAATAGCCAACATGGAAGAAGCTTTTCATCAAATGCACCTTCCTTTATACACAAAGGTGCTGGTGTTGGATGGGGTTCAGGTAGAGGGAGAAAAGTTGATACAGTGAAAAATGAAAGAATTCCTAGTCATGAACAACATAATGATGCAGGCTCCTACCATGTAACAACTACTAGTGACACCACATCGCAGCTCTTTGTGAATGACTTTAGACAATTCAGAATATCAGAGTCTGGTCGCATGAATCAGTCAAAGAATGCTTATAATCATGAAGCTTCACAATCTGAGAGACCTTTTGGTCGGGGACAAGGTAGGGGTGCTTCTAGTAGCATTGCATTGCGGCCTCAATGGAGTGGTGCAACATCTCAGCAAGGGAAAGATCGTAATCGTTGTTTTGAGGCACTTTTACTTAACGACGATGAAGACAATAAAGAGGCAGCCATTGAAGACGAAGAAGAGAATGATGATGAGAGGATTCTTACAAAAATTGGGAAGGAGAGGAGAAGAGTATTACCAAGTGTTGGCCAAGGTTGGTTGAAGATGGAGAAGAAAAGAGTGCCCGCAAAACCCTTGAAAGAAGAAAAAAAGGGATTCCAGTTTTGA 2958 0.3979 MGVPAFYRWLTDKYPRVVQDVDKAMQDPNGVKYDNLYLDMNAIIHPCFHPDSDHDDIPLPTTFEDVFRNVFDYIDRLVDTVRPRKLVYMAIDGITPRAKMNQQRSRRFRAAKDKEIHEAEEERLRKQFEMEGKQVLPKQESEVADFNIITPGTEFMHELSKALKGYISTRINCNSLWKDIMVILSDANVPGEGEHKIMSYIRKQRTLEEYDPNTCHCLYGLDVSFQQQPKVAAKPFKLLHIWLLREYIELDMKIENPPKTCSIIKLERIIDDFIFMCFFAGNDFLPHLPSLDIHEGAIDLLMTVYKEEFSTLGGHLVDMSRVGEKNAAFMKLSRVENFILKVGTYEEKMFKKRSEIRERRLKRLIRDNEDARREEKNEKCFFDLDDENTSDCTLLIKKAPDSKLSLLANNVSATHAEIEQNTKDLKDELKKSIRQKCDLLLSEDFLVDKIKFGAPGYKERYYKAKFSVETPTDIEGKRKEIGPFCYSTFNVGGGGDRLQFICRSRSTLKDWHGFYPFHYGPFASDLKGMSQVRVKFEKGVPFLPLDQLLSVLPPGSAHALPKAYAQLMLDEKSRILDFYPQDFEVDTEGKRFTWQGICKLPWIDDTRLVAETKELKNELSEKEAIRNSLKADSLFVRSSSKLAEKFGSLSVDPNCKIDTRISSDGIGGTISPCNEEACLDLCDNKEDRVLCVYYELPAGSNHIPCLLSNVSLPEKKIFEGDIMETELWHERQRYFSRFERVQTQDKWRSENKSNSSRVFSHSSRQHERSFSSNGSSQHARSFSSNANSQHGRSFSSNAPSFIHKGAGVGWGSGRGRKVDTVKNERIPSHEQHNDAGSYHVTTTSDTTSQLFVNDFRQFRISESGRMNQSKNAYNHEASQSERPFGRGQGRGASSSIALRPQWSGATSQQGKDRNRCFEALLLNDDEDNKEAAIEDEEENDDERILTKIGKERRRVLPSVGQGWLKMEKKRVPAKPLKEEKKGFQF 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00987 985 PANTHER 5'->3' EXORIBONUCLEASE 1 883 IPR027073 -
Vian5g00987 985 Coils Coil 612 632 - -
Vian5g00987 985 CDD PIN_XRN1-2-like 36 248 - -
Vian5g00987 985 PIRSF Exonuclease_Xrn2 223 916 IPR017151 GO:0004534|GO:0005634|GO:0006139
Vian5g00987 985 PIRSF Exonuclease_Xrn2 1 225 IPR017151 GO:0004534|GO:0005634|GO:0006139
Vian5g00987 985 MobiDBLite consensus disorder prediction 894 911 - -
Vian5g00987 985 Gene3D - 530 629 - -
Vian5g00987 985 MobiDBLite consensus disorder prediction 745 800 - -
Vian5g00987 985 Pfam XRN 5'-3' exonuclease N-terminus 1 222 IPR004859 GO:0003676|GO:0004527
Vian5g00987 985 Coils Coil 408 435 - -
Vian5g00987 985 Pfam Xrn1 helical domain 265 722 IPR041412 -
Vian5g00987 985 MobiDBLite consensus disorder prediction 753 800 - -
Vian5g00987 985 Coils Coil 354 378 - -
Vian5g00987 985 Gene3D - 1 146 - -
Vian5g00987 985 MobiDBLite consensus disorder prediction 866 911 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00987 Vian-Chr5 31336357 31345322 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00987 - - vra:106779905 1405.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00987 5 31336357 31345322 Vian5g00987 5 31336357 31345322 ECH