Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00984 ATGATCCCTATGGTAGCAAAAAGAGCAGTAACAGTGCTGCTATATGTGACAGTTCTTCAAAGTGTGAAGGGTTTTCTGCTACACACCAATGATAGGTGGATTGTGAGTGAAAGTGGGAAGAGGGTGAAGCTAGCATGTGTGAACTGGGTGTCCCATTTGGATGGTGCTGTTGCTGAGGGCTTAAATCAACAACCTTTGGATATGATTTCCAAGAGAATCAAGTCTATGGGATTCAACTGTGTGAGACTCACATGGCCACTTTTCTTGCTCACCAATCACTCTCTTGCTTCTCTCACTGAAGTGGTGAAAAGCTTAGGAGAGAATGATGTAATGGTGATTCTGGACAATCACGTGAGCCAACCAGGGTGGTGCTGTAGTAACACGGACGGCAATGGCTTCTTTGGGGACCAATATTTTGATCCTGACCTTTGGATTACGGGTCTTACCAATATGGCTACACTTTTCAGAGGGGTGAGTAATGTGGTAGGCATGAGCTTGAGAAATGAGTTACGAGGTCCCAAACAAAATGTCAACCAATGGTACAGGTATATGCCAAAGGGAGCAGAAGCAGTGCATGCAGCAAATCCAGAAGTTCTTGTGATTCTTTCTGGTCTAAACTTTGACACTGACCTATCATTCATGAAAGAGGAAGCACTGAAACTGAGCTTCAATGGAAAACTGGTGTTGGAACTGCACTGGTACAGCTTCAGTGAGGGTAAAGCATGGGCCTCAGGGAATGCAAACCAAGTGTGTGGGGAAGTCACAGGAAATGTGATGAGAAGGGCAGGGTTCCTTTTGGGCCAAGGCTTCCCATTATTTGTCAGTGAGTTTGGGCTGGACTTGAGAGGCTCAGATGCCAATGACAATACCTACCTAAACTGCTTCATGGCATTTGCAGCCCAATTTGACTTGGATTGGGCCTTATGGACACTTGGTGGAAGTTACTACATAAGACAAGGAGTTGTTGGAATGAATGAGTATTATGGTATTCTCAATTCAGATTGGAGTGAGGTTAGAAACCCTAGTTTCTTGCAAAGGATCTCAGCTATTCAAATTCCTTTTCAAGGGCCAGGTTTATCAGAAGCAAAACCATACAAAGTGATTTTTCACCCTTTGACAGGTCTTTGCATCATAAGAAAATCACTGGTTGAGGCGTTGAGGTTGGGACCTTGTTCTGATTCTGATCAATGGGAGTACACAGACCAAAGCACAGTATCCATAAAGGGTACCTATTTCTGTTTACAAGCAGAGGGAGAAGGGAAGCAAGCAAAAATTGGGAATATATGCTCAGCTCCCAATTCAAGATGGGAAATGATCTCTGATTCAAAGATGCATCTATCAGCTCAAATCAATAACTCTTCTGGTGTGTGTCTTGATGTAGACACCAATAACATCATTGTCACCAACACTTGTAAATGTCTAACCAAAGATAACACTTGTGAACCTGCAAGCCAATGGTTTAAACTTGTTGACAGCACAAGGAATTAA 1488 0.4321 MIPMVAKRAVTVLLYVTVLQSVKGFLLHTNDRWIVSESGKRVKLACVNWVSHLDGAVAEGLNQQPLDMISKRIKSMGFNCVRLTWPLFLLTNHSLASLTEVVKSLGENDVMVILDNHVSQPGWCCSNTDGNGFFGDQYFDPDLWITGLTNMATLFRGVSNVVGMSLRNELRGPKQNVNQWYRYMPKGAEAVHAANPEVLVILSGLNFDTDLSFMKEEALKLSFNGKLVLELHWYSFSEGKAWASGNANQVCGEVTGNVMRRAGFLLGQGFPLFVSEFGLDLRGSDANDNTYLNCFMAFAAQFDLDWALWTLGGSYYIRQGVVGMNEYYGILNSDWSEVRNPSFLQRISAIQIPFQGPGLSEAKPYKVIFHPLTGLCIIRKSLVEALRLGPCSDSDQWEYTDQSTVSIKGTYFCLQAEGEGKQAKIGNICSAPNSRWEMISDSKMHLSAQINNSSGVCLDVDTNNIIVTNTCKCLTKDNTCEPASQWFKLVDSTRN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00984 495 Pfam Cellulase (glycosyl hydrolase family 5) 62 312 IPR001547 GO:0004553|GO:0071704
Vian5g00984 495 SUPERFAMILY Ricin B-like lectins 363 489 IPR035992 -
Vian5g00984 495 CDD RICIN 365 471 IPR000772 -
Vian5g00984 495 Gene3D - 368 488 - -
Vian5g00984 495 SUPERFAMILY (Trans)glycosidases 27 344 IPR017853 -
Vian5g00984 495 Gene3D Glycosidases 24 352 - -
Vian5g00984 495 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 98 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00984 Vian-Chr5 31314316 31317955 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00984 25 494 Glycoside Hydrolase AT1G13130 54.832 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00984 - - gmx:100816102 827.394