LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian5g00967	ATGGCAGCGAAAGGGGCATTGTGGTTGATGATGCTGCCACTGGTAGTACCTGTTGTTATTGCCACTAACACCAACAACGTGTACCAGCCTTGTGCTGATGCCAAGATTCAGAGATCTGATGGCTTCACTTTTGGCATTGCCTTCAGTTCCAGGGAGTCTTTCTTCTTCAATCAGTCCCTTCAGCTCTCTCCCTGTGACCATCGTCTTTCTCTCTCGTCCTCCAACTCACAGCTTGCTCTCTTTCGTCCCAAGGTTGATGAGATCTCTCTCCTCACCATCAACACCTCTAGTTTTTTCCCTTTTGGAACTTTGAGAATATGGGATGGGGATAATGGGATTGTGGCTTCTGTTCATTGGTTGGTCAAGTGGGGCATTTCTGTATTTGATATTGACTTGGTGACTTCTCGGGATAGTTATGGTGGATATATGGTGGCATTTGCTGGGAGAAAGTATGCTGCACGGTCTCCACTTGCATTTGTTGCAAACAGCACATATACAGTGACAAGTTTCACACTGGTGCTGGAGTTTCAGAAGGGTAGGCTGCAGAACTTGTACTGGAAGAGAGATGGTTGCTCTTCATGCAAGGGAAAATCCAACTTTGTTTGCCTCAACAAACAAGATTGTGCTATCAGAACATCATCTTGTAAAGGCAGAGGAGGGGCAGTAGATTGCAGTCTAGGAATTCAGCTAGCATTTTCTGGTACAGACAAGCATCTATCAGTGCTTAATTCATGGTATGAAGTGGAAAATCTGCGGCAGTACTCTCTCTACGGCTTGTACTCAAATCTGAGGGACTCTCTCACCAGCCAGCTAAATAAACCGGACGGGGCCGGGTCACGGCACCTCTTCGTTGCAACAAATCCGAACCCTAAATCCGAAATCAGCCATGGTAGCGTAGCGGAAGCAGAAAGCGAAAAGCAAAGAAACAGAAAGAGGAAGGAGAAGAAGCACTGCGTGGAAGCCATGGGCAAGAAGAACGAGAACCAGAAAACGGGGCTAGGTCGAGCCCTGGTGAAGCAGCACAATCAGATGATTCAACAGAGCAAGGACAAGTCTCGCTTCTACAAAAAGAAGGTTCTCGAATCCTTCACCGAAGTCTCCGACATCGACGCCGTCATCGAACAATCCCTCGAATCTCTCCCCGAACACGCCGTCGCATCCACCACCATCATCAGCCTTAGGGACCCTACCGAAATGACGCCTGAAGAAACGAGAAAGCAGGAGGAGGCGCTCCACGCCAGCAGCCTCCGAGTTCCGCGCCGGCCGCCGTGGACGCCCGACATGTCTCCCGAGGAGCTTCACGACAGCGAAACGCAAGCTTTTTTGGTTTGGCGTCGCAGTTTAGCGAGGCTTGAGGAGAATAAGAAGCTTGTCCTTACACCTTTTGAGAAAAATCTTGACATCTGGAGACAGCTCTGGCGTGTTGTTGAGCGTAGTGATCTGCTTGTTATGGTTGTCGATTCCCGAGATCCTCTGTTTTATCGGTGTCCAGACCTTGAGGCTTATGCAGGGGAGGTTGATGAACATAAACGCACATTGCTTCTGGTTAATAAGGCAGATCTTTTGCCTGCTTCTATCAGAGATAAATGGGCAGAATATTTTCGAGCTCACGATATTCTCTTCATCTTCTGGTCTGCTAAAGCTGCCACAGCAGCCCTGGAAGGAAAAAATCTTGGTTCATCATGGGATGATGATAACACGGGGAGAACTAATAGCCCAGACACAAAGATATACGGAAGGGACGAGCTATTGGCCCGCCTTCAATCAGAAGCAGAACAGATAGTGAACAGGAGGAATTCCGGCACCTCCGGTGCAGGGCCATCTAACATTAAATCACCTGCTGAAAATACTGCTGGCAGTTCATCATCGAGTAATGTAGTTGTGGGATTTGTTGGATATCCTAATGTGGGGAAAAGTTCAACTATCAATGCTCTCGTTGGTGAAAAACGGACTGGTGTCACCTCCACCCCTGGGAAAACAAAGCACTTTCAGACATTAATTATCTCTGATAAGCTGACCCTATGTGATTGTCCTGGATTAGTTTTTCCATCTTTCTCTAGCTCAAGATATGAGATGATTGCTTGTGGGGTGTTGCCAATTGATAGGATGACTGAACACCGGGAATCTGTCCAAGTTGTGGCTGATAGAGTCCCAAGACATGTCATCGAACAGATTTATAAGATAAGGCTTCCTAAACCTAAGCCATATGAGTCCCAATCCCGTCCCCCTCTAGCATCTGAACTTTTAAGAGCATACTGTGCTTCCCGTGGGTATGTTGCTTCTAGTGGACTCCCTGATGAAACTAGGGCCACCCGTCAGATACTGAAAGATTACATTGATGGGAAGCTGCCTCACTATGAAATGCCTCCAGGTACATCAGAAGAGGAACAAGCTTTGGAAGATCCCACCACACATGACTCAATTGACTTGCATGCATCAGATTCGTCTGATATTGAAGATTCTTCAGATGTCGAGAGTGGTCTTGCACCAAATCTTGAGCATGTATTGGATGACCTCACTTCATTCGACCTAGCTAATGGACTTGCTCCAAAAAGTACGACTCTTAAGAAGTCCAAGGCATCCCATAAACATCATAAAAAACCGCAGAGGAAAAAAGATCGTGCCTGGAGAGCAGGAAACGATGATGCTGATGGGACGCCGGTTGTAAGATTCTTTCAGAAACCAGCTAACACAGGTTCTCTGAAGGATTGA	2712	0.4716	MAAKGALWLMMLPLVVPVVIATNTNNVYQPCADAKIQRSDGFTFGIAFSSRESFFFNQSLQLSPCDHRLSLSSSNSQLALFRPKVDEISLLTINTSSFFPFGTLRIWDGDNGIVASVHWLVKWGISVFDIDLVTSRDSYGGYMVAFAGRKYAARSPLAFVANSTYTVTSFTLVLEFQKGRLQNLYWKRDGCSSCKGKSNFVCLNKQDCAIRTSSCKGRGGAVDCSLGIQLAFSGTDKHLSVLNSWYEVENLRQYSLYGLYSNLRDSLTSQLNKPDGAGSRHLFVATNPNPKSEISHGSVAEAESEKQRNRKRKEKKHCVEAMGKKNENQKTGLGRALVKQHNQMIQQSKDKSRFYKKKVLESFTEVSDIDAVIEQSLESLPEHAVASTTIISLRDPTEMTPEETRKQEEALHASSLRVPRRPPWTPDMSPEELHDSETQAFLVWRRSLARLEENKKLVLTPFEKNLDIWRQLWRVVERSDLLVMVVDSRDPLFYRCPDLEAYAGEVDEHKRTLLLVNKADLLPASIRDKWAEYFRAHDILFIFWSAKAATAALEGKNLGSSWDDDNTGRTNSPDTKIYGRDELLARLQSEAEQIVNRRNSGTSGAGPSNIKSPAENTAGSSSSSNVVVGFVGYPNVGKSSTINALVGEKRTGVTSTPGKTKHFQTLIISDKLTLCDCPGLVFPSFSSSRYEMIACGVLPIDRMTEHRESVQVVADRVPRHVIEQIYKIRLPKPKPYESQSRPPLASELLRAYCASRGYVASSGLPDETRATRQILKDYIDGKLPHYEMPPGTSEEEQALEDPTTHDSIDLHASDSSDIEDSSDVESGLAPNLEHVLDDLTSFDLANGLAPKSTTLKKSKASHKHHKKPQRKKDRAWRAGNDDADGTPVVRFFQKPANTGSLKD	903

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian5g00967	903	Pfam	50S ribosome-binding GTPase	628	684	IPR006073	GO:0005525
	Vian5g00967	903	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	467	758	IPR027417	-
	Vian5g00967	903	MobiDBLite	consensus disorder prediction	850	903	-	-
	Vian5g00967	903	ProSiteProfiles	Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile.	469	683	IPR030378	GO:0005525
	Vian5g00967	903	MobiDBLite	consensus disorder prediction	285	316	-	-
	Vian5g00967	903	MobiDBLite	consensus disorder prediction	781	826	-	-
	Vian5g00967	903	Gene3D	-	468	684	IPR027417	-
	Vian5g00967	903	CDD	HSR1_MMR1	468	683	-	-
	Vian5g00967	903	PRINTS	GTP1/OBG GTP-binding protein family signature	628	648	IPR006073	GO:0005525
	Vian5g00967	903	PRINTS	GTP1/OBG GTP-binding protein family signature	674	689	IPR006073	GO:0005525
	Vian5g00967	903	MobiDBLite	consensus disorder prediction	398	415	-	-
	Vian5g00967	903	FunFam	Large subunit GTPase 1	688	789	-	-
	Vian5g00967	903	MobiDBLite	consensus disorder prediction	597	623	-	-
	Vian5g00967	903	FunFam	Large subunit GTPase 1	468	684	-	-
	Vian5g00967	903	MobiDBLite	consensus disorder prediction	856	873	-	-
	Vian5g00967	903	MobiDBLite	consensus disorder prediction	396	433	-	-
	Vian5g00967	903	PANTHER	LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED	322	877	IPR043358	GO:0003924
	Vian5g00967	903	Gene3D	-	687	789	IPR023179	-
	Vian5g00967	903	MobiDBLite	consensus disorder prediction	798	818	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian5g00967	Vian-Chr5	30970842	30979566	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian5g00967	K14539		-	gmx:100817523	985.326

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian5g00967	5	30970842	30979566	Vian5g00967	5	30970842	30979566	ECH