Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00924 ATGGCTAAGAGCTCGTTCAAGATGGAGCACCCTCTCGAGAGGAGACAGGCTGAAGCAGCTCGCATAAGAGAGAAGTATCCTGACAGAATTCCAGTAATTGTTGAAAGGGCAGAGAAGAGTGATGTTCCTGAAATTGACAAGAAAAAGTATCTTGTTCCTGCTGATTTGACTGTTGGGCAGTTTGTGTATGTGGTGAGGAAGAGAATTAAGCTGAGCCCCGAGAAGGCAATCTTCATTTTTGTGAAGAACATCTTACCACCAACTGCGGCAATGATGTCTGCAATATACGAGGAAAACAAGGACGAAGATGGATTCCTATATATGACTTACAGTGGAGAGAACACATTTGGACTTGTGTTCTGA 363 0.4353 MAKSSFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGLVF 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00924 120 CDD Ubl_ATG8 12 114 - -
Vian5g00924 120 FunFam Autophagy-related protein 1 117 - -
Vian5g00924 120 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Vian5g00924 120 Gene3D - 1 118 - -
Vian5g00924 120 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 3 117 IPR004241 -
Vian5g00924 120 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00924 Vian-Chr5 30403356 30405166 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00924 K08341 - gmx:100301895 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00924 5 30403356 30405166 Vian5g00924 5 30403356 30405166 ECH