Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00921 ATGAACAACAGGATGCGCGTGACATTTACCGTGGCTACAGTAGCCATCGCAGCTACTATCATATCCGTTTTCTTGGCCGCGCGAAGGCGCAAGAAGCACGACTCCTCTAGTTCGTGCTATTTGCATTCCGAACAGAAACCACAGAGTGCATTCAAGCGCGTATTATCGGACAATTCTTACACTCAGTTCAAGCATCTCAACAGAGACGAGAATGCTTCGAATTCGCATCCGTTTGAGGCGGAGATTACAGCATTGTTGAAAACTCCTCCGCCTGAAATTGAATTTGGAACTGTAGACTTAGAAATGAAAGATTCATATGTTTGGGTTCACACCGAGACGCAGTTAAAGGAATTAGTTGATGCGTTGAGTGAAGAGAGGTTTTTTGCCGTGGATACAGAGCAACATAGCTTACGATCTTTTCTAGGCTTTACAGCATTAGTTCAGATTTCTACAGTGGAGAAAGATTATTTGGTTGACACAATAGCCTTGCATGATTTTATGGGCATTCTTCGCCCTGTTTTGGCCAATCCTTCAATTTGTAAAGTGTTCCATGGGGCTGACAATGATATAGTCTGGTTACAGAGGGACTTCCACATATACGTTGTTAACCTCTTTGATACTTCAAAGGCATGTGAGCTGCTGTCAAAACCACAGAAATCACTTGCTTATTTGCTTGAAACTTACTGTGGTGTGACAACAAATAAATTACTACAGCGTGAAGATTGGAGACAGCGCCCTCTCTCAGCAGAAATGGTACATTATGCCCGAACAGATGCACACTTTCTGTTGTATATTGCGAATTGTCTGATCAATGAACTCAAACAACTGGACAACGAAAACTCTTGTTCCAGTGACAAATTCCATTTTGTTCTTGAGGCTAGTCGGCGTTCAAACATGATATGTTTACAACTTTTCACAAAGGAGATTGAAGCATATCCTGGGGAATCTTCTGCATTATCATTATTTTCACGTCAAGTGTGTAGTCATGGTTCTACGTCTATATCAAATGAAACCCAGAATATTGTGAGGCAACTATGCGCATGGAGAGATCTGATGGCTCGTATTCATGATGAGAGCTTAAAATATGTACTCTCAGACCAGGCAATTGTTGCTTTGGCAAGTCAGCCTTCAGCTAGTCACTCTGAAATACACAAGATCATAGCCCAGGCTGACATCAATATGGAAATGGGTGTGAACTCTTTCATCATTTCCTCATCTCCTGTTGTTTGCAGTCACCTCAGTGATATCTATCATATGCTTGCAAACAAGTTGGTTAATGATGATGATGATATTTATTCAGTGATTCTTCAGAAGTGTATAGGTCAAAATGGGAGTTGTCCACTTTCAATATTTAATTATGCTTTGTTGATAAATAGTAATCTAAGACCTAATTTAGCCCATAAACAACTGGGCCTAAAGAGTTCTAAACAATATTCTCGGAAGGCTTCTCGAGATTTGTTTGTTCAAAAGTTCTCTTGTAAATCTCCTGTTTATCACAATTGCCGGATATTTGCTAATGATGGGAGGCTACTTTGTTATTGTGACGAGAAGAAGCTTAAATGGTATCTTAGTCGGGATCTTGCAAAACTTGTTGACGAGGATCCTCCAGCTATAATGCTTCTTTTTGAACCCAAAGGTCGTCCAGAGGATGAAGACAATGACTTTTATATCCAGAGCAAGAAAAATATATGTGTTGGATGTGGTGAAGGAAATCACTATTTACGATATCGAATCATCCCATCATGTTACAGAATACATTTCCCTGAGCATTTGAAAAGCCATCGTTCTCATGATATTGTCCTACTTTGTGTGGATTGCCATGAGGTTGCACATGCCGCAGCAGAAAAGTACAAGAGAAAAATAGCTGCTGAATTTGGGATTCCTCTCTACCTTCGGAGGGTAGTTCATCCAGGTCAAAAGACTGAAAAACAAATTGAAGAGAGTGGTGTATCTCCATTACAGTTACGAACAGCTGCTATGGCTCTTTTACGCCATGGACCAAGAATGCCTCCCAATCGCCGAGAAGAACTGACTGAGATTATAAAGAGATATTATGGAGGAAGGGACATATCTGACGAAGATCTAGAAAGAGCTTTGCAAGTTGGCATGACGCCTCATGAGAGAAGACGATTTGAGAAGAAGAGAGGGTTTTTTTTTAAACATTCTACAGGGAGTACTGCTACAGTGCCAGAACAGAATAATCATATTGGTTGCTCACCCAGAATGAGTAATGTGGATGACTTAAAAACTGAGGCTCATGATGGCTCATATGCAAATGAAGTAGATACGGAGCTCTTTATGAGAAAAGATGATTTTAGAAACTCCACTTCAGCTTCTGATGTTACAGTTAACGGACCTGACTCTGCAGCTTTGAATGAAGATGAGATTACAGTTGCAACTGCAGATTGCAATGAGGGCGGTGACTCTGCTGCTGTAAATGTTGATAACAGCTGTTTGAACAGAACACAAACAAATGGACTTGGTGACTTGTCTTGTTCTCCCAATGATGAAAAATCTATACATACCGAACATAATTCAAAACTCTCTCTCTTGGGACATGGACCTCATGGGAAACAAGTTGTAGAACATTTACTTAGGGAGTATGGTGAAGATGGCATTCGAGAGTTTTGTCAAAGATGGAGACAAGTATTTGTGGACGCTGTAAAACCACGTTTTCTTCCTGGTGGTTGGGATGTAAAACACAGTGGAAGAAGGGACTTCGGAGAGTTCAGTGTGTACAAACCAGACAAGAGAGCAGCTTCAGCCACTGCAGAGTACTTACAGTAA 2787 0.408 MNNRMRVTFTVATVAIAATIISVFLAARRRKKHDSSSSCYLHSEQKPQSAFKRVLSDNSYTQFKHLNRDENASNSHPFEAEITALLKTPPPEIEFGTVDLEMKDSYVWVHTETQLKELVDALSEERFFAVDTEQHSLRSFLGFTALVQISTVEKDYLVDTIALHDFMGILRPVLANPSICKVFHGADNDIVWLQRDFHIYVVNLFDTSKACELLSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVHYARTDAHFLLYIANCLINELKQLDNENSCSSDKFHFVLEASRRSNMICLQLFTKEIEAYPGESSALSLFSRQVCSHGSTSISNETQNIVRQLCAWRDLMARIHDESLKYVLSDQAIVALASQPSASHSEIHKIIAQADINMEMGVNSFIISSSPVVCSHLSDIYHMLANKLVNDDDDIYSVILQKCIGQNGSCPLSIFNYALLINSNLRPNLAHKQLGLKSSKQYSRKASRDLFVQKFSCKSPVYHNCRIFANDGRLLCYCDEKKLKWYLSRDLAKLVDEDPPAIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKIAAEFGIPLYLRRVVHPGQKTEKQIEESGVSPLQLRTAAMALLRHGPRMPPNRREELTEIIKRYYGGRDISDEDLERALQVGMTPHERRRFEKKRGFFFKHSTGSTATVPEQNNHIGCSPRMSNVDDLKTEAHDGSYANEVDTELFMRKDDFRNSTSASDVTVNGPDSAALNEDEITVATADCNEGGDSAAVNVDNSCLNRTQTNGLGDLSCSPNDEKSIHTEHNSKLSLLGHGPHGKQVVEHLLREYGEDGIREFCQRWRQVFVDAVKPRFLPGGWDVKHSGRRDFGEFSVYKPDKRAASATAEYLQ 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00921 928 Gene3D HRDC domain 326 430 IPR044876 -
Vian5g00921 928 Pfam 3'-5' exonuclease 106 273 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vian5g00921 928 SMART 35exoneu6 106 274 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vian5g00921 928 SUPERFAMILY Ribonuclease H-like 46 276 IPR012337 -
Vian5g00921 928 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 39 917 IPR045092 GO:0000175|GO:0000467
Vian5g00921 928 ProSiteProfiles HRDC domain profile. 335 415 IPR002121 GO:0003676
Vian5g00921 928 SUPERFAMILY HRDC-like 332 387 IPR010997 GO:0000166|GO:0044237
Vian5g00921 928 Gene3D - 28 311 IPR036397 GO:0003676
Vian5g00921 928 FunFam Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain 45 311 - -
Vian5g00921 928 Pfam HRDC domain 340 386 IPR002121 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00921 Vian-Chr5 30329714 30337563 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00921 K12951 - gmx:100791485 1511.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00921 5 30329714 30337563 Vian5g00921 5 30329714 30337563 ECH