Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00916 ATGTCTTGGGTCCTCCGATCTACGAAGTCTAAGGTTCTCTCTTCTTCCGCTTCTTCATTTTCCAGATCCTTCTCTTCCCTCTCCCACGCCGCCCATCACCTCCCTCATAATCACATCGGATCTCTCTCTCCCCTCACCGATCGCTTCCACCGCAACACCACTTTGACGCCTCTCGCGAAGGAAAACGCTTCTGGCGGAAACTTGACTGGTCTTCCCAATGTTCGTGCGAATAAGATTGGCTGTGATTCTAATGCGATCAATTCGTTGATGTACAAAGCTTCTGGGCCGGACACCACTGTGCTGTCTGGAGCTAGATATGGCACTAGAGTTTGTGCTGCACACAATCCAATGCTATCGGGAATCAATACTGTGATGGCTAGAAGTTTTGAGAGAAGTATAGAAGCTGGCACGCTGGGAATGATTGGTCATAAACGTTGCATGAGTGACGTCCCAAGTAAGAGGAGCGAGACAAACACATCTGGTTTTCGTCCGTTATCTCCTCATCTCCCTCTTTATCAGCCGCAACTTTCTTCAACTCTCTCCATTTTTAATAGAATAGCTGGAGCTTTCTTAGCCGGTGTCATTTTGCTTTTTTATATGATATATATAAAAGTGGGTTCGGTTAGCCTCACCTATGACTCTTTCTACCAATTCATATTTTATTCATCAAAACTAAACCTGCTTGTCATGGAGATTTCTGCCTTAGCCGTAACCTACCATCTCTATAGTGCAATTCGTCACTTACGTTTATGA 753 0.4515 MSWVLRSTKSKVLSSSASSFSRSFSSLSHAAHHLPHNHIGSLSPLTDRFHRNTTLTPLAKENASGGNLTGLPNVRANKIGCDSNAINSLMYKASGPDTTVLSGARYGTRVCAAHNPMLSGINTVMARSFERSIEAGTLGMIGHKRCMSDVPSKRSETNTSGFRPLSPHLPLYQPQLSSTLSIFNRIAGAFLAGVILLFYMIYIKVGSVSLTYDSFYQFIFYSSKLNLLVMEISALAVTYHLYSAIRHLRL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00916 250 CDD SQR_TypeC_SdhC 163 248 IPR014314 GO:0000104|GO:0006099|GO:0009055|GO:0045281
Vian5g00916 250 Gene3D Fumarate reductase/succinate dehydrogenase, transmembrane subunit 147 249 IPR034804 GO:0016020
Vian5g00916 250 Pfam Succinate dehydrogenase/Fumarate reductase transmembrane subunit 163 248 IPR000701 GO:0016627
Vian5g00916 250 PANTHER SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT 148 248 IPR014314 GO:0000104|GO:0006099|GO:0009055|GO:0045281
Vian5g00916 250 FunFam Succinate dehydrogenase subunit 3-1, mitochondrial 148 249 - -
Vian5g00916 250 SUPERFAMILY Fumarate reductase respiratory complex transmembrane subunits 156 248 IPR034804 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00916 Vian-Chr5 30275098 30282776 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00916 K00236 K03885 gmx:100527396 338.961