Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00903 ATGGCTTCATCACTCTTTATTCCTTCATCCATAGTGGAAGAAGAAGCCAGGTTTGAAGCCGAAGTGGCAGAGGTGCAAGCATGGTGGAACTCTGATAGGTTCAAGCTAACCAAAAGGCCATACTCAGCTAGAGATGTGGTGTCCCTGAGAGGAAACCTCAGACAAAGCTATGGCTCGGGTGAGATGGCCAAAAAGCTATGGCGCATTCTGAAGAACCACCAAGCCAATGGCACAGCTTCAAGGACTTTTGGTGCACTTGACCCTGTTCAGGTCACTCAGATGGCGAAGCACTTGGACACCATCTATGTCTCAGGATGGCAGTGTTCAGCCACTCACACCACCACCAATGAGCCAGGCCCTGACCTTGCCGATTACCCTTATGACACTGTCCCCAACAAGGTTGAGCATCTCTTCTTCGCTCAGCAATACCATGACAGGAAACAAAAAGAGGAGAGAATGAACATGAGCAGGGAAGAGAGGGCAAGAACCCCTTATGTTGATTACTTGAGACCCATCATAGCTGATGGTGACACAGGTTTTGGTGGCACCACAGCAACTGTGAAGCTTTGCAAGCTCTTTGTGGAGAGAGGTGCTGCTGGCATCCACATTGAGGACCAGTCTTCTGTGACAAAAAAGTGTGGCCACATGGCAGGGAAAGTTCTGGTTGCCATCAGTGAACACATCAATAGGCTAGTGGCAGCAAGGCTTCAGTTTGATGTTATGGGGGTGGAAACTGTGCTGGTGGCCAGAACAGATGCAGAAGCTGCTAATTTGATTCAATCTAACATTGACACTAGGGACCACCAATTTATCTTGGGTGTGACCAACCCAAACCTGAGGGGAAAGAGCTTGGCAGCTCTTATGGCAGAAGACATGGCTGCTGGGAAAAGTGGAGCAGAACTTCAGGCTTTGGAGGATGAGTGGCTGTCAAAGGCAGAGTTGAAGACTCTGTCAGAAGCAGTTGTGGAAGCAATAGAGAGACAGAACATTGGAGAGGAAGAGAAGAGAAGGAAGTTGAATGAGTGGAAGCAGCATTCAAGTTATGAAAGGTGTCTTTCCAATGAAGAAGGTAGGGAGATAGCAGAGAGGTTAGGAGTGAGGAAGCTGTTTTGGGACTGGGACTTGCCTAGGACTAGAGAAGGGTTTTACAGGTTCAAAGGGTCTGTAACAGCATCAGTTGTGAGAGGTTGGGCTTTTGCTCCACATGCTGATGTGATATGGATGGAAACTGCAAGCCCCAATGTGGGTGAGTGCATAGAGTTTTCTGAGGGGGTTAGATCAAAGCACCCTGAGATGATGCTAGGCTACAACCTCTCTCCATCTTTCAATTGGGATGCTTCTGGCATGAGTGATGAGCAAATGAGAGACTTCATTCCCAAGATTGCAAAGTTGGGGTATGTGTGGCAGTTCATCACAGTTGGAGGTCTGCATTCTAATGCACTCATAACTTCAACATTTTCAAGAGACTTTGCCAAGAGGGGCATGCTGGCTTATGTTGAGAGGATTCAGAGAGAGGAGAGGAACAATGGAGTTGACACTCTTGCTCACCAGAAATGGGCTGGTGCTAACTACTATGACAGATACCTCAAGACTGTCCAAGGAGGAGTAACCGAAGAGCAGTTTAAAGAGTCATGGACTAGGCCAGGAGCTGTTGACATTGATGGAGGCACTATTGTGGTTGCTAAGGCCAGAATGTGA 1698 0.4794 MASSLFIPSSIVEEEARFEAEVAEVQAWWNSDRFKLTKRPYSARDVVSLRGNLRQSYGSGEMAKKLWRILKNHQANGTASRTFGALDPVQVTQMAKHLDTIYVSGWQCSATHTTTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQKEERMNMSREERARTPYVDYLRPIIADGDTGFGGTTATVKLCKLFVERGAAGIHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAANLIQSNIDTRDHQFILGVTNPNLRGKSLAALMAEDMAAGKSGAELQALEDEWLSKAELKTLSEAVVEAIERQNIGEEEKRRKLNEWKQHSSYERCLSNEEGREIAERLGVRKLFWDWDLPRTREGFYRFKGSVTASVVRGWAFAPHADVIWMETASPNVGECIEFSEGVRSKHPEMMLGYNLSPSFNWDASGMSDEQMRDFIPKIAKLGYVWQFITVGGLHSNALITSTFSRDFAKRGMLAYVERIQREERNNGVDTLAHQKWAGANYYDRYLKTVQGGVTEEQFKESWTRPGAVDIDGGTIVVAKARM 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00903 565 ProSitePatterns Isocitrate lyase signature. 211 216 IPR018523 GO:0003824
Vian5g00903 565 PANTHER ISOCITRATE LYASE/MALATE SYNTHASE 13 538 IPR006254 GO:0004451|GO:0019752
Vian5g00903 565 FunFam Isocitrate lyase 262 377 - -
Vian5g00903 565 NCBIfam isocitrate lyase 22 537 IPR006254 GO:0004451|GO:0019752
Vian5g00903 565 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 12 535 IPR015813 GO:0003824
Vian5g00903 565 PIRSF ICL 368 546 IPR006254 GO:0004451|GO:0019752
Vian5g00903 565 PIRSF ICL 12 280 IPR006254 GO:0004451|GO:0019752
Vian5g00903 565 Gene3D - 17 535 IPR040442 -
Vian5g00903 565 CDD ICL_PEPM 66 257 IPR039556 GO:0003824
Vian5g00903 565 Gene3D - 262 377 - -
Vian5g00903 565 Pfam Isocitrate lyase family 21 537 IPR006254 GO:0004451|GO:0019752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00903 K01637 - gmx:100782793 1059.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00903 5 30020565 30022692 Vian5g00903 5 30020565 30022692 ECH