Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00894 ATGTATATTCACCGCCCAACCTTGAAGATGCTAAATAATAATAGAGATAAATGTGTAGAAGCAGATATGCATTCAAATATCCAACATGACAGTTTTATCAACTCGAAAGATGGGACAAGGATGCCCCAAGATTGTAAGACACGCGTGTCTGGTTGTAACAAGCGAGTGTTGTGTACTACCTATGCTTGCGATGCAGCCATGAATTGCGAAGGAGAGAAGCTTGTGATGAACCTTCCCTCTGCTCTCCCCATACTCTTCTGTTCCGCTTTAAGGATGTCTCGCTCCTTAGGATTGTTTGTGGGTCTTATGATGGTTGTGGGGGTGGCTTCCACCTCCAACTTCGATCAACTTTTCCAACCAAGTTGGGCTTTTGATCACTTCGTTCATGAAGGAAATCTCCTCAAACTCAAACTTGACAATTATTCTGGGGCTGGTTTTGGATCCAAAAGCAAGTATATGTTTGGGAAAGTGACCATCCAGCTTAAGCTTGTGGAAGGTGATTCTGCGGGGACTGTCACTGCTTTCTATATGTCCTCGGAGGGGCCAAACCACAATGAGTTTGATTTTGAGTTTCTGGGCAACACCACAGGGGAACCATACTCAGTCCAAACAAACGTGTATGTGAACGGAGTGGGCAACAGAGAACAAAGGCTTAACCTTTGGTTCGACCCTACCAAGGATTTCCATTCATACTCTATCTTCTGGAATCAACGACAAGTTGTGTTTTTGGTGGATGAAACGCCGATAAGAGTGCACACAAACATGGAGCACAAGGGTATTCCTTATCCGAAAGATCAGCCCATGGGTGTGTACAGTTCTATATGGAATGCTGACAATTGGGCCACCCAGGGTGGTCGTGTGAAGACGGATTGGAGCCACGCACCCTTCTTTGTCACCTTCAAGAACTTTGAGATCAATGCTTGTGAATGCCCTGTGGCAGTGGCTGCAATGGATAACTCTAAACGCTGTAGCAGCAGTGAGGGTAAGAAATATTGGTGGGATGAGCCAAATTTGGCTGAACTCAACGTGCACCAGAGCCATCAGCTGAAGTGGGTTAGAGCCAGACACATCTTCTATGACTATTGCTCTGACACTGCTAGGTTCCCAGTCACGCCAGCTGAGTGTGTTCATCACCGTCACAACTGA 1146 0.4607 MYIHRPTLKMLNNNRDKCVEADMHSNIQHDSFINSKDGTRMPQDCKTRVSGCNKRVLCTTYACDAAMNCEGEKLVMNLPSALPILFCSALRMSRSLGLFVGLMMVVGVASTSNFDQLFQPSWAFDHFVHEGNLLKLKLDNYSGAGFGSKSKYMFGKVTIQLKLVEGDSAGTVTAFYMSSEGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHSYSIFWNQRQVVFLVDETPIRVHTNMEHKGIPYPKDQPMGVYSSIWNADNWATQGGRVKTDWSHAPFFVTFKNFEINACECPVAVAAMDNSKRCSSSEGKKYWWDEPNLAELNVHQSHQLKWVRARHIFYDYCSDTARFPVTPAECVHHRHN 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00894 381 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 109 375 IPR044791 GO:0004553
Vian5g00894 381 Pfam Glycosyl hydrolases family 16 117 292 IPR000757 GO:0004553|GO:0005975
Vian5g00894 381 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 328 375 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vian5g00894 381 PRINTS Glycosyl hydrolase family 16 signature 144 162 IPR008264 GO:0004553|GO:0005975
Vian5g00894 381 PRINTS Glycosyl hydrolase family 16 signature 220 237 IPR008264 GO:0004553|GO:0005975
Vian5g00894 381 PRINTS Glycosyl hydrolase family 16 signature 202 215 IPR008264 GO:0004553|GO:0005975
Vian5g00894 381 FunFam Xyloglucan endotransglucosylase/hydrolase 101 377 - -
Vian5g00894 381 CDD GH16_XET 109 375 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vian5g00894 381 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 112 300 IPR000757 GO:0004553|GO:0005975
Vian5g00894 381 SUPERFAMILY Concanavalin A-like lectins/glucanases 114 379 IPR013320 -
Vian5g00894 381 Gene3D - 101 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00894 Vian-Chr5 29822414 29834256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00894 144 380 Glycoside Hydrolase AT4G03210 72.152 6.20e-134 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00894 K08235 - gmx:100785982 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00894 5 29822414 29834256 Vian11g00712 11 7564914 7566760 PCT