Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00879 ATGGAAGCTTGCTGCTGCAACCTTGAAGTGGATGTAAATGGAGAAGAGACCTTCATGGTGGACAAGACTGTTATTACACATTATTCAAACAAGTTTGCTAGATTATTTGGAAAGTCTGGTGGTGCCACAGGAAAGCTTAAAGTAATATTTCACGATTTTCCAGGAGGTGCAGAAGGTTTTGAGCTTATGTTAAAATTCTGTTACAACAATGGAACAGCTGATATAAGTCCTTCAAATTTGTTCCTTGCGCGTTGTGCTGCTGAGTACATGGAAATGAAGGAACCTGTGGCTGATGTATCTAACTTATTGGAGCTAACTGAAAAGTCACTCCACGAGATCAACTATTGGACTTGGTCAGATGTTTTGATTGCTTTGAAGCAGTGCCAGAATTTACTAGTTCTAGATTGTTCGGAGATGGTAGAAAAATGCTTGGACACTATTGTGGGGAGGCTGGTTTTGGCTAGTGAAGCAAGTCCTTGTCCATCAACTAGTTCCACAGATAGTTCTTGGATTCGGTTTTCATGTGACTCTAAGAGCACTGAGAGTGTAAAAACAAGTTTCACTCGTTTGACATGGTGGTTTGAAGATCTCCTTTTTTTCAGTCCCTTGTTAGTTGCAATGTTGGTTAAGTCAATGCTTGCGCGAAAGATGGACCATGTTTTGATCAGCAAGTTTCTTCTCTACTATCAGAAGGCTAAATTCTCCACTTCTACTACAGAAGAGAAGAGCAAGATAATAGAAATGGTCATAGATATGCATTATGATATGGATCTAAGTTGTGTTCCTTGCAAGACTTTGTTTGGGATTCTGAGGGTAACTTTAGGTTTAAATATAAGCAAATGTAGCAGGAACAGGTTGGAGACTATGATTGGTTCCCAATTGGATCAAGCAACCTTGGACAATTTGCTTGTTCCATCTCCTTATGGAATAAGCTACTTGTATGATGTGAACCTTGTTTTGAGATTTTTGAAGGCATTCTTGCGAAGAGGAAATGGTTCAGTCACTCCCATTCGGATGAAGAAAGTTGCGAGCTTAATAGATTTGTATACAGCAGAAATAGCCCCTGATCCTTGTTTGAAAATTTCCAAGTTCTTGGCTCTTGCCACAGCACTTCCAGATTCTGCAAGAGATTCTTATGATGAGATCTACCAAGCAATGGACATGTATCTTGAGGTACATGCTCAATTGTCACAGGAAGAACGAGTGAAGATATGCTGTGTTTTAAACTATGAGAAGCTTTCACCTCAAGCTTGCCTACACCTATCTCAGAACAAAAAATTTCCTTCAAAATCTGCAGTTCAGGCTCTTATCTCTCAACAATCTAAGCTAAAAAATTTACTCCATGTTACTCCCAGTACAAGTTCATACAACGATTCACCTTGCAGCTCCAACGGGGCTGCTCAAAAGGTAAAGAAAGATAAAACCAGTGAACAGGTTGTGTTGTATGCTGGCAATTTTGATCTTGCTACAGATAATGAGAAACTCAAAGCACATTTACAAGGAATGCAGTGGAGGGTCATGGAATTAGAGAAATTCTGTAGGAAAATGCAAGTCCAAATGGCAAAGATCACAAAATCAAAAGCATCAGGCAATAGTTATGCAAAATCTTTGCCAAAGCTATGCTCATGA 1629 0.3941 MEACCCNLEVDVNGEETFMVDKTVITHYSNKFARLFGKSGGATGKLKVIFHDFPGGAEGFELMLKFCYNNGTADISPSNLFLARCAAEYMEMKEPVADVSNLLELTEKSLHEINYWTWSDVLIALKQCQNLLVLDCSEMVEKCLDTIVGRLVLASEASPCPSTSSTDSSWIRFSCDSKSTESVKTSFTRLTWWFEDLLFFSPLLVAMLVKSMLARKMDHVLISKFLLYYQKAKFSTSTTEEKSKIIEMVIDMHYDMDLSCVPCKTLFGILRVTLGLNISKCSRNRLETMIGSQLDQATLDNLLVPSPYGISYLYDVNLVLRFLKAFLRRGNGSVTPIRMKKVASLIDLYTAEIAPDPCLKISKFLALATALPDSARDSYDEIYQAMDMYLEVHAQLSQEERVKICCVLNYEKLSPQACLHLSQNKKFPSKSAVQALISQQSKLKNLLHVTPSTSSYNDSPCSSNGAAQKVKKDKTSEQVVLYAGNFDLATDNEKLKAHLQGMQWRVMELEKFCRKMQVQMAKITKSKASGNSYAKSLPKLCS 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00879 542 Pfam NPH3 family 191 418 IPR027356 -
Vian5g00879 542 ProSiteProfiles BTB domain profile. 6 70 IPR000210 GO:0005515
Vian5g00879 542 SUPERFAMILY POZ domain 5 99 IPR011333 -
Vian5g00879 542 ProSiteProfiles NPH3 domain profile. 191 442 IPR027356 -
Vian5g00879 542 PANTHER OS12G0117600 PROTEIN 7 519 IPR043454 -
Vian5g00879 542 SMART BTB_4 6 107 IPR000210 GO:0005515
Vian5g00879 542 Gene3D Potassium Channel Kv1.1; Chain A 2 119 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00879 Vian-Chr5 29465338 29468257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00879 18 522 EF-hand Containing Proteins AT3G44820 27.176 2.29e-55 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00879 - - gmx:100784792 982.63