Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00875 ATGGTTACTTCAGACAGAAACATGTTACAGAACTACGTTCCAGTTTATGTTATGCTCCCACTAGGAGTTGTCACTGTTGACAATGTTTTTGCAGACCCTAATGGCCTCAAAGAACGGCTTTTGAAGCTGAGAGCAACAGGTATTGATGGGGTTATGGTTGATGTGTGGTGGGGGATCATAGAACTGAGGGGGCCTAAGCAGTATGATTGGAGAGCCTATAGGAGCTTGTTTCATCTGGTTCAGGAATGTGGCTTGAAACTTCAAGCTATTATGTCATTCCATCAGTGTGGAGGGAATGTAGGAGATGTAGTTAACATCCCAATTCCCAAGTGGGTGCTCGACATTGGAGAATCTGATCCTGATATCTTCTACACCAACCGTTCAGGCACAAGGAACAAGGAGTATCTAACTATTGGTGTGGACGATAAGCCTATATTCCATGGAAGAACAGCCATTGAGTGCTATGACAAATATTTGAAGGCAGATTTCAAAGCAGCTGCAGCAAGGGCTGGCCATCCTGAATGGGAACTGCCAGATGACGCAGGCCAGTACAATGATGTTCCCGAATCTACTGGATTCTTCAAATCAAATGGCACGTATGTCACTGAGAAAGGGAAGTTCTTCTTGACTTGGTATTCAAACAAATTGCTGAGTCATGGTGATCAAATCCTAGAGAAAGCCAACAAAGCATTCCTGGCCTGTAAAGTCAAATTAGCGATCAAAGTATCTGGAATCCACTGGTGGTACAAAGTTGAAAATCACGCAGCTGAGCTTACTGCTGGATATTACAACCTTAATGATAGAGACGGATATCGTCCCATTGCAAGAATGCTGTCTCGCCATCATGCCATTTTGAACTTTACGTGTCTTGAGATGAGAGACTCAGAACAAAGCTCAGATGCCAAAAGTGCACCACAGGAGCTCGTAATGCAGGTACTGAGTGGAGGTTGGAGAGAAGACATCCTAGTTGCTGGAGAAAATGCACTTCCAAGGTATGATTCCACAGCATACAACCAAATCATACTGAACGCAAGGCCACAAGGGGTCAACAAAAATGGCCCTCCAAAACTAATGATGTTTGGAGTGACATATCTTCGCCTATCAGATGATCTACTGCAACAATCAAATTATGATACGTTCAAAAAATTTGTGCTAAAGATGCATGCAGATCAGGGTTACAGTGAAGACCCTCAAAACTACAATCATGTCATAACTCCATTGAAGCCATCGGCACCAAAGATTCCCATTGAGGTTCTTCTTGAAGCGACTAAACCAATACCGCCATTCCCCTGGCTTCCAGAGACAGATATGAAAATTGATGGCTGA 1326 0.4359 MVTSDRNMLQNYVPVYVMLPLGVVTVDNVFADPNGLKERLLKLRATGIDGVMVDVWWGIIELRGPKQYDWRAYRSLFHLVQECGLKLQAIMSFHQCGGNVGDVVNIPIPKWVLDIGESDPDIFYTNRSGTRNKEYLTIGVDDKPIFHGRTAIECYDKYLKADFKAAAARAGHPEWELPDDAGQYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLSHGDQILEKANKAFLACKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQSSDAKSAPQELVMQVLSGGWREDILVAGENALPRYDSTAYNQIILNARPQGVNKNGPPKLMMFGVTYLRLSDDLLQQSNYDTFKKFVLKMHADQGYSEDPQNYNHVITPLKPSAPKIPIEVLLEATKPIPPFPWLPETDMKIDG 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00875 441 Gene3D Glycosidases 5 153 - -
Vian5g00875 441 Gene3D Glycosidases 154 441 - -
Vian5g00875 441 Pfam Glycosyl hydrolase family 14 146 383 IPR001554 GO:0000272|GO:0016161
Vian5g00875 441 ProSitePatterns Beta-amylase active site 1. 94 102 IPR018238 GO:0000272|GO:0016161
Vian5g00875 441 SUPERFAMILY (Trans)glycosidases 9 437 IPR017853 -
Vian5g00875 441 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 68 86 IPR001554 GO:0000272|GO:0016161
Vian5g00875 441 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 308 330 IPR001554 GO:0000272|GO:0016161
Vian5g00875 441 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 47 61 IPR001554 GO:0000272|GO:0016161
Vian5g00875 441 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 90 111 IPR001554 GO:0000272|GO:0016161
Vian5g00875 441 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 153 391 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00875 Vian-Chr5 29406723 29409220 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00875 2 439 Glycoside Hydrolase AT2G32290 57.490 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00875 K01177 - gmx:100787580 726.087