Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00867 ATGGCTGGAATTGGCTTTGAGGACCTGCTTCCTGTGATGGCCAACAAGCTTGGTGGGGAGGGGCTTATGAAGGAGCTCTGCAACGGGTTTGAGCTGCTGGTGGACAAAGAAAAAGGGGTCATAACGTTGGAGAGTTTGAGGGAGAAAGCTGCACTCTTGGGGCTGCAGGACTTGAAAGAGGATGAACTTGTTAGCATGATGACTGAAGGGGATCTTGATGGAGATGGGGCACTCACCCAGATGGAGTTTTGCGTTTTGATGTTCAGGTTGAGCCCTGAATTGATGGAGGAATCCTGGTTTTGGCTTGAAGACGCTCTCCAACACGAACAACTCAACCAACACCACAACAACACCGATAGCAACTCTTCCATTTAG 375 0.496 MAGIGFEDLLPVMANKLGGEGLMKELCNGFELLVDKEKGVITLESLREKAALLGLQDLKEDELVSMMTEGDLDGDGALTQMEFCVLMFRLSPELMEESWFWLEDALQHEQLNQHHNNTDSNSSI 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00867 124 Pfam EF-hand domain pair 37 89 IPR002048 GO:0005509
Vian5g00867 124 ProSitePatterns EF-hand calcium-binding domain. 71 83 IPR018247 -
Vian5g00867 124 Gene3D - 4 119 - -
Vian5g00867 124 ProSiteProfiles EF-hand calcium-binding domain profile. 58 93 IPR002048 GO:0005509
Vian5g00867 124 SUPERFAMILY EF-hand 23 103 IPR011992 -
Vian5g00867 124 PANTHER CALCIUM-BINDING PROTEIN KIC 5 111 IPR044205 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00867 Vian-Chr5 29282074 29282448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00867 6 109 EF-hand Containing Proteins AT5G54490 61.905 1.30e-41 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00867 K24345 - gmx:100527206 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00867 5 29282074 29282448 Vian5g00867 5 29282074 29282448 ECH