Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00863 ATGTTTAGATTTTCTTGTTTCCATGCTAATGTACACGGCAATAAAACAAAGAAAACAGTTCAACCTTCTACTGAAGTAATGTTGAAGACTTATCAAGATGCTGCCCAAAATCAACGCCGTAAAGATTCATCTAATCCTCCAAGCGCATATTCACCCCTTCTGAAAGAACAAGCAGACCAGCAAATAGATGTGACAGGGATTCATATTAGCAATTGGGATTCAGTTGAGCGCAGTTGTAGGTCAGAGGATATGAGTAGCAAGTTTTCCTTTGAAAATGACAGTCAAGTTAACCAACCTAGGCCTGTTATGAAGAAGAGTCAGTCTCTTCAAAGTGTGCTTGATCAAGGCATAAGGGATGGTGATGAAGATATGGGGCTGTCGTGTGATGATGCCAAAAGCCCAATTGAGTCAAAGATGTCAACTTCCAAAAAGTATCATAATGGAAACCCTGTTGATCAGTATGGAAGTAATCCAAACATTGAGTTTGCTGCCAGTTCAGGTTTTGCAAATGATGCCTCACTTTTTTCAATTGGAGACCCAACACCTTCTGATAAAGACGCCCGTGAAATTTCTGACACTCCTTTATCTGGTGAATATGTTGGTGACATTCCTGACCAGACTTCTGTTCCTGGTAGTGTATCACTACGGAAGTCACATTCTTCACCCAATATCAGAGCTTCCATACTTTCTACTGAAAAAGATGCTTTTAGACGTGCATTGTCAAGATCCTGTGAGGATCTTCATGCTTTAAGCATGAGGCACAAAGAGGAATTCATCAACGACTTTAATGATCAAATTAGGGGAGATCAAGAAAGAGAGAATGACATGGGAAAAACTGAAGATGGACATATGGACAACCTCTTTGATGATGGTTTCGATTCTTATCTGCTTACTGGTTCAGCAAAAGACTGGGTAATGCCATTGACATATGATACAGGTGATTCCAAAACCCTTCAAGGAGATTCCTCAGTTGAATTTCCTAACAAGGATTTCAAGATTAAGCGCATTGAAGATTGGGTTATTGGTCTGCAGCATTGTGGACCACCCGTAGAGGAAACAAATGAAGTGCTGCCTGAAGTTGTTAAGCCTTTAGCTGATGTTAACACAGTAAATGGTGTGACTGCTGCCATTGTAGATCACAAGGCCACTCCAGGAATGGATGCAGCTAAAAGATATATATCTTCTCTGGGGCCTAATGCCACTACCGCTCAGCTGGCTAATCATGGGTTGGTTGTGATCCCCTTTTTGAGCGCATTCGTCAGTTTGAAAGTGCTCAATCTGTCTGGAAATGCTATCGTGAGGATAACTGCTGGTGCTCTTCCCCGTGGACTTCACGCACTGAATTTGTCTAGAAACAAGATCTCCACTATCGAAGGATTACGCGAACTTACAAGACTTCGTGTCCTAGACCTCAGTTACAACCGTATATTAAGAATTGGACATGGCCTTGCATCCTGCTCATCTCTGAAAGAGTTGTACCTGGCTGGAAACAAGATCAGCGAAGTGGAGGGTCTGCACCGTCTCTTAAAATTAAGCATCCTGGATCTCCGTTTTAACAAGATTTCAACAGCCAAATGTCTGGGCCAACTTGCAGCAAACTATAACTCTTTGCAAGCTATCAACTTGGATGGGAACCCTGCCCAGAAAAATGTTGGAGATGAACAGATGAAGAAATATCTGCAGGGCCTTCTACCCCAACTCGTCTACTACAATCGGCAGCCTATAAAAGTGAGCACTTTGAAGGATGGAGCAGAACGGTCGGTTCGGCTAGGAATGAATTCTCATCAGTTTGATCGCAGCCTTAGGTCGGATCGCAAGACCACAAGGAAGAGTAGCCAAGGTGGTGTTGGCTCACGGAGGTCAGTGGCCACTTCCACTCATGTTCGAAGAAATGTGGATTCACCAAAAGTATCCAGAGGCAAGCAAGCTCTGCCACCATCTAGAACCAAAGTACCAACCCACACTCGCCATCAGTTTGAAGCCTCCACCAAAGTATTGAACGTGACCCCAAAGCTCTCCATGCGCAAGAGTCGCAGCGAGGGAAATTTTGGAGCTCTGTGA 2061 0.4367 MFRFSCFHANVHGNKTKKTVQPSTEVMLKTYQDAAQNQRRKDSSNPPSAYSPLLKEQADQQIDVTGIHISNWDSVERSCRSEDMSSKFSFENDSQVNQPRPVMKKSQSLQSVLDQGIRDGDEDMGLSCDDAKSPIESKMSTSKKYHNGNPVDQYGSNPNIEFAASSGFANDASLFSIGDPTPSDKDAREISDTPLSGEYVGDIPDQTSVPGSVSLRKSHSSPNIRASILSTEKDAFRRALSRSCEDLHALSMRHKEEFINDFNDQIRGDQERENDMGKTEDGHMDNLFDDGFDSYLLTGSAKDWVMPLTYDTGDSKTLQGDSSVEFPNKDFKIKRIEDWVIGLQHCGPPVEETNEVLPEVVKPLADVNTVNGVTAAIVDHKATPGMDAAKRYISSLGPNATTAQLANHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHALNLSRNKISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLSILDLRFNKISTAKCLGQLAANYNSLQAINLDGNPAQKNVGDEQMKKYLQGLLPQLVYYNRQPIKVSTLKDGAERSVRLGMNSHQFDRSLRSDRKTTRKSSQGGVGSRRSVATSTHVRRNVDSPKVSRGKQALPPSRTKVPTHTRHQFEASTKVLNVTPKLSMRKSRSEGNFGAL 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00863 686 Gene3D Ribonuclease Inhibitor 374 559 IPR032675 -
Vian5g00863 686 ProSiteProfiles Leucine-rich repeat profile. 465 487 IPR001611 GO:0005515
Vian5g00863 686 MobiDBLite consensus disorder prediction 590 686 - -
Vian5g00863 686 Pfam Leucine rich repeat 421 476 IPR001611 GO:0005515
Vian5g00863 686 MobiDBLite consensus disorder prediction 86 107 - -
Vian5g00863 686 ProSiteProfiles Leucine-rich repeat profile. 443 464 IPR001611 GO:0005515
Vian5g00863 686 SUPERFAMILY Outer arm dynein light chain 1 408 576 - -
Vian5g00863 686 MobiDBLite consensus disorder prediction 194 219 - -
Vian5g00863 686 FunFam Protein phosphatase 1 regulatory subunit pprA 380 561 - -
Vian5g00863 686 SMART LRR_sd22_2 441 462 - -
Vian5g00863 686 SMART LRR_sd22_2 486 507 - -
Vian5g00863 686 SMART LRR_sd22_2 463 485 - -
Vian5g00863 686 SMART LRR_sd22_2 508 532 - -
Vian5g00863 686 MobiDBLite consensus disorder prediction 610 631 - -
Vian5g00863 686 ProSiteProfiles Leucine-rich repeat profile. 488 509 IPR001611 GO:0005515
Vian5g00863 686 PANTHER NISCHARIN RELATED 239 642 - -
Vian5g00863 686 SMART LRR_typ_2 419 442 IPR003591 -
Vian5g00863 686 SMART LRR_typ_2 508 530 IPR003591 -
Vian5g00863 686 SMART LRR_typ_2 463 486 IPR003591 -
Vian5g00863 686 MobiDBLite consensus disorder prediction 648 676 - -
Vian5g00863 686 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00863 Vian-Chr5 29216247 29218603 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00863 - - gmx:100790061 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00863 5 29216247 29218603 Vian5g00863 5 29216247 29218603 ECH