Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00831 ATGGCTACCCAACAAGAAAACGTGTTGAGTGTCGACCCGATTCCTATTGGGGTCGAGACACCAGTGGCTTCGCAACAGGAGAATCGGTTGGATATTGACCCGAATCCAGTTGGGGTGGAGACCCAGGAAGCGCAGACAGAAAAGTTTGCGACTTTGGGTTGTGTTGCTCCTATTGAGGAAGGAGTGGAGAAGATCAATTTGTTGGATTCCTCTCTTTCTTTTTCGATTGAGGAGAACGGTGATAAGGATGACAGCGGAAGTGATAGTGATAGTGAAAGCGGAAGTGATAGTGATAGTGAAAGCGGAAGTGAGAGCGAAAGCGGAAGTGAAAATTCAGGGTCTGAAAGTTCTGATTCTGGTAGTGAAAGCAGTAGTAGTAGCGGCAGTAGTACTAGTGATAGCGAAGAGGAGAGTGACGATGGCGACGACGATGATGACAACGAGGTACAAGTTGAAGAAGGCGATATTAGTTCTGATGAAGAAAAGGTAGCTAGTTGGAGCATGGTTGATGATGATGCCGATCATGATGATGAAGAGGGTGATGCTGGAGTTGGACCCATCAGGTCAAAGAACGAGCTTCAGAATCTGCCCGCTGTTCCTCCTGTCAATGCTGCTTTGGAACCACACCATCAAACGTTGCCAGTGGGAATCATTACTTCTATTCTTGGTGCTCAAGTCATTGTGGAAGGAGTGGAGAAGCATGACCCTCTTAATGAGGGTTCTATTCTTTGGTTGACTGAAAGTCGAAAGCCACTAGGTTTAATTGATGAAATCTTTGGACCAGTCAAGAACCCTTTTTATATTGTGAGATATAATTCTGAAAGTGAAGTTCCTGAAGGGGTCAATGGGGGAACCTTGATCTCGTTTGTTCCAGAATTTGCTGAGCATGTGCTTAATAACAAGGATCTTTATAGGAAAGGATACGATGCATCTGGTGCGAATGATGAAGAGTTATCTGATGAATTGGAGTTTTCAGATGACGAGAAAGAGGCTGAATACAAGAGAATGCATAGAACTACAAAAAGAGGTGTAAATGATCAAAATCATGGCAAGAAAAAAAATAACAGAAAGAAATTTTCACCTAAAGAGCATGCAGCACCATCCATGCCTGATGCACCTGCCGCACCTTTGGTTAGTCATGGAAATTGTCTTCCTTTTCAAGGCATTGGACAAGCTCTGTTGGGTGGAACTGCCACAGTTTCATCATTTCCCTACTCAAACGCAGCACCCCCCAACTTTGGTACTCGTGGAATTTGGACACAAGGAACATTTCCACAGCAGCCACAGAATGCTATGTTTCCTAATGGTTTTCCTGCAAATGGGGTATCATGGTTCCCACAAAACACTCAAATTCCTCCACAGCTGCCAATGCCAGGAATTCCATTTCAACAGCAAGTACATGGCAATCAGGGATCTCTTTCCTCAACTATGCTACCTGGGATGCAGCCCAATATGTTTGCTCAATCCATATATGCAGCAGGGCTTGTTGGTCAAAACCAAATGACATTTGGGATGGGATCACCCTTCCCACAGATTCAGCCACCAGCACAACAGGGATTTCCATCCAATTCTGGCGCTCCCCCTCAGTTTCATGCACGTCCATCTGGTAATCGTGGAAGAAAAACATTCCATGGTGCAGGAAGGAAAGGGTGGCGACCAGCCAAGTGA 1668 0.452 MATQQENVLSVDPIPIGVETPVASQQENRLDIDPNPVGVETQEAQTEKFATLGCVAPIEEGVEKINLLDSSLSFSIEENGDKDDSGSDSDSESGSDSDSESGSESESGSENSGSESSDSGSESSSSSGSSTSDSEEESDDGDDDDDNEVQVEEGDISSDEEKVASWSMVDDDADHDDEEGDAGVGPIRSKNELQNLPAVPPVNAALEPHHQTLPVGIITSILGAQVIVEGVEKHDPLNEGSILWLTESRKPLGLIDEIFGPVKNPFYIVRYNSESEVPEGVNGGTLISFVPEFAEHVLNNKDLYRKGYDASGANDEELSDELEFSDDEKEAEYKRMHRTTKRGVNDQNHGKKKNNRKKFSPKEHAAPSMPDAPAAPLVSHGNCLPFQGIGQALLGGTATVSSFPYSNAAPPNFGTRGIWTQGTFPQQPQNAMFPNGFPANGVSWFPQNTQIPPQLPMPGIPFQQQVHGNQGSLSSTMLPGMQPNMFAQSIYAAGLVGQNQMTFGMGSPFPQIQPPAQQGFPSNSGAPPQFHARPSGNRGRKTFHGAGRKGWRPAK 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00831 555 MobiDBLite consensus disorder prediction 328 350 - -
Vian5g00831 555 MobiDBLite consensus disorder prediction 510 530 - -
Vian5g00831 555 MobiDBLite consensus disorder prediction 100 132 - -
Vian5g00831 555 FunFam H/ACA ribonucleoprotein complex non-core subunit NAF1 184 290 - -
Vian5g00831 555 MobiDBLite consensus disorder prediction 310 374 - -
Vian5g00831 555 MobiDBLite consensus disorder prediction 510 555 - -
Vian5g00831 555 Pfam Gar1/Naf1 RNA binding region 214 294 IPR007504 GO:0001522|GO:0042254
Vian5g00831 555 MobiDBLite consensus disorder prediction 76 164 - -
Vian5g00831 555 MobiDBLite consensus disorder prediction 133 155 - -
Vian5g00831 555 Gene3D Probable tRNA pseudouridine synthase domain 184 290 IPR038664 -
Vian5g00831 555 SUPERFAMILY Translation proteins 214 275 IPR009000 -
Vian5g00831 555 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 18 522 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
Vian5g00831 555 MobiDBLite consensus disorder prediction 19 42 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00831 K14763 - gmx:102661630 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00831 5 28614869 28617277 Vian5g00831 5 28614869 28617277 ECH