LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian5g00829	ATGAGTCGCTACGATCCCAATCCCTTCGACCAAGAAGAGGTCGAGGTTAATCCCTTCGCGGATGGACAGGCTAAAGGAAAAGGGTCAAGTTATGGTGGAGGTGCATTTTATACCACTAATTCTGGAAGTGTTCCCCCTGCAAACTCAAAGCTCTCACCCCTTCCTCCAGAGCGTTATGATCGTGGGGCAAATATTGACATCCCCCTTGATAACTCCAAGGACACCAAAGCAAAGGAGAAGGAACTTCAAGCTAGAGAAGCTGACTTAAAAAGAAGGGAACAGGAACTAAAACGAAGGGAAGATGCCATAGCACGAGCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTCCCCATCATTCATCATGACATTGGAAACGAAATACCAATACATCTTCAAAGGACCCAATACATTGCATTTTCGACATGGTTGGGTTTGGTTCTGTGTCTTGTATGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAGGTCCAACCATCTGGTTTCTTGCGATTATATATTGTATTTCGGGTGTTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAGGACCGACAGTGCTCTGAAATTTGGCTGGTTTTTCTTACTTTACATGATTCACATTGCCTTCTGCATTCTCGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTGACGGGTATTTTGGCTGCGATTGACGTGTTGGGCGATAATGCATTGGTTGGGATATTCTACTTTATTGGGTTTGGATTTTTCTGTCTTGAGTCAGTGCTGAGCATCTGGGTTATACAGCAAGTATACATGTACTTCCGCGGCAGTGGCAAGACTGAAGTTTTGAAGCGTGATGCTGCGAGAGGGACAATGATGGCAGCTCTATAA	912	0.443	MSRYDPNPFDQEEVEVNPFADGQAKGKGSSYGGGAFYTTNSGSVPPANSKLSPLPPERYDRGANIDIPLDNSKDTKAKEKELQAREADLKRREQELKRREDAIARAGIVIEEKNWPPFFPIIHHDIGNEIPIHLQRTQYIAFSTWLGLVLCLVWNIVAVTTAWIKGEGPTIWFLAIIYCISGVPGSYVLWYRPLYRAMRTDSALKFGWFFLLYMIHIAFCILAAVAPPIIFKGKSLTGILAAIDVLGDNALVGIFYFIGFGFFCLESVLSIWVIQQVYMYFRGSGKTEVLKRDAARGTMMAAL	303

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian5g00829	303	PANTHER	SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP	4	300	IPR007273	GO:0015031\|GO:0016020
	Vian5g00829	303	MobiDBLite	consensus disorder prediction	33	48	-	-
	Vian5g00829	303	Pfam	SCAMP family	112	283	IPR007273	GO:0015031\|GO:0016020
	Vian5g00829	303	MobiDBLite	consensus disorder prediction	1	78	-	-
	Vian5g00829	303	Coils	Coil	72	102	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian5g00829	Vian-Chr5	28600132	28607443	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian5g00829	3	303	Miscellaneous Gene Families	AT1G11180	66.883	5.37e-142	400

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian5g00829	K19995		-	gmx:100796729	545.428